View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5989_high_1 (Length: 688)

Name: NF5989_high_1
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5989_high_1
NF5989_high_1
[»] chr8 (4 HSPs)
chr8 (19-672)||(41015124-41015777)
chr8 (39-114)||(1605267-1605341)
chr8 (19-124)||(11142727-11142831)
chr8 (19-124)||(1662526-1662630)
[»] chr7 (2 HSPs)
chr7 (38-534)||(34575641-34576145)
chr7 (19-114)||(13946671-13946765)
[»] chr1 (4 HSPs)
chr1 (19-113)||(4328782-4328876)
chr1 (19-124)||(30410795-30410899)
chr1 (19-124)||(29395391-29395495)
chr1 (19-124)||(35161978-35162082)
[»] chr3 (3 HSPs)
chr3 (19-124)||(4865144-4865248)
chr3 (19-124)||(55041454-55041558)
chr3 (39-70)||(23217047-23217078)
[»] chr2 (1 HSPs)
chr2 (38-269)||(17830885-17831116)
[»] chr6 (3 HSPs)
chr6 (39-70)||(11074905-11074936)
chr6 (79-124)||(11178441-11178486)
chr6 (79-124)||(32444557-32444602)


Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 19 - 672
Target Start/End: Original strand, 41015124 - 41015777
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41015124 acaatgcacataactatttcaaaactctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgagtttcaaatccagt 41015223  T
Q  119 acccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccgattctgcctatgaatatgaaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41015224 acccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagaatctttgcgctgattctgcctatgaatatgaaga 41015323  T
Q  219 gtctctaaattgctaatcaatgtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttc 318  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015324 gtctctgaattggtaatcaatgtttctaatttttcaatgtaacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttc 41015423  T
Q  319 ccatcacttccaatctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgttaacggccatgtattacctttcatctta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41015424 ccatcacttccaatctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgttaacagccatgtattacctttcatctta 41015523  T
Q  419 catcattttgtattctgaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaat 518  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015524 catcattttgtattctaaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaat 41015623  T
Q  519 ccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcgaagtttttaaaatatatacacaa 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41015624 ccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcaaagtttttaaaatatatacacaa 41015723  T
Q  619 tcatatgcttatcatgctggtttattttgtacaagcttttgttatgctccctat 672  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41015724 tcatatgcttatcatgctggtttattttgtacaagcttctgttatgctccctat 41015777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 1605341 - 1605267
Alignment:
Q  39 aaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatc 114  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  1605341 aaaaccctaatccttgatttagagcgggaaaattatgca-ttaaccacacttaatgacatttttgaatttcaaatc 1605267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 11142727 - 11142831
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||||||  ||| ||||||||||||| |||  || |||||||||||||||  | |||||||||||||||| |||||||||||||||||||  ||    
T  11142727 acaatgcacataacaattgcaaaaccctaatcattggctttgagcgggaaaattgtt-atttaaccacatttaatggcatttttgaatttcaaatcatgt 11142825  T
Q  119 accctt 124  Q
    ||||||    
T  11142826 accctt 11142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 1662630 - 1662526
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatcctt-gatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccag 117  Q
    |||||||||| ||  ||| |||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||  |    
T  1662630 acaatgcacacaacaattgcaaaaccctaatccttagattt-gagcgggaaaattgtg-atttaaccatatttaatgtcatttttgaatttcaaatcatg 1662533  T
Q  118 taccctt 124  Q
    |||||||    
T  1662532 taccctt 1662526  T

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Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 38 - 534
Target Start/End: Original strand, 34575641 - 34576145
Alignment:
Q  38 caaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagtacccttca--acctagcgc 135  Q
    |||||||||||||||||  || |||||||||||| ||| | | |||||||||||||  |||||||||||||||||||| |||||||| |  || ||||||    
T  34575641 caaaaccctaatccttgcatttgagcgggaaaat-gtg-attaaaccacatttaattgcatttttgaatttcaaatcctgtacccttaatgacatagcgc 34575738  T
Q  136 tctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccgattctgcctatgaatatgaagagtctctaaattgctaat 235  Q
      ||||| |||| ||| | ||||||||||     |||  |||||| ||||| |||||   || ||||   |||| |||||||||||||||  ||| ||||    
T  34575739 ggtaaactatccctcacggccattaaatgcactctttagtttttccagactatttgcatggaatctgtacatgactatgaagagtctctacgttggtaat 34575838  T
Q  236 ca--atgtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctt--tctgatttcccatcacttccaa 331  Q
    ||  ||||||| || ||| |||| |||||||||||| |   |||||| |||||||||||||||||||| | |  ||    ||  ||||||||||||||||    
T  34575839 caatatgtttccaactttccaatgtaacagttaccatttccatgcaccatatgattgtataaatatgattgattttggcatgcgttcccatcacttccaa 34575938  T
Q  332 tctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgttaacggccatgtattacctttcatcttacatcattttgtat 431  Q
    ||  ||||||| || |||||   | ||||| |||||||  ||||||||| ||||||||||||  | |||||||||||||   ||| |||||||||||| |    
T  34575939 tc-gtcccattttgccatgg---aaaataatatccagaattttttgtcacaccagatgttaataggcatgtattaccttaattctgacatcattttgttt 34576034  T
Q  432 tctgaatttgcgttttggtttgactatc--------tatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaatccatt 523  Q
    | |||||   ||||||   |||||||||        ||||||||||||| || |||||||| ||| | ||| ||||||| ||||||||||| ||||||||    
T  34576035 tttgaataatcgttttttattgactatctatgtatttatgaataacacgtttcttatgttggtatatttttgttgcagcgcccttggatcccaatccatt 34576134  T
Q  524 aactgacatag 534  Q
    |||||| ||||    
T  34576135 aactgatatag 34576145  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 13946671 - 13946765
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatc 114  Q
    |||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||  ||||||||||||||||||    
T  13946671 acaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatgggatttttgaatttcaaatc 13946765  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 4328876 - 4328782
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaat 113  Q
    |||||||||| || | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4328876 acaatgcacacaactttttcaaaaccctaatccttggttttgagcgggaaaattgtgcacttaaccacatttaatgctaattttgaatttcaaat 4328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 30410899 - 30410795
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | |||||||||||||||| |||||||||||||||||||  ||    
T  30410899 acaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaatggcatttttgaatttcaaatcatgt 30410801  T
Q  119 accctt 124  Q
    ||||||    
T  30410800 accctt 30410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 29395495 - 29395391
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||| ||  ||| ||||||||||||| |||  || |||||||||||||||| | |||||||||||||||| |||||||||||||||||||  ||    
T  29395495 acaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtg-atttaaccacatttaatgacatttttgaatttcaaatcatgt 29395397  T
Q  119 accctt 124  Q
    ||||||    
T  29395396 accctt 29395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 35161978 - 35162082
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||| ||  ||| |||||||||||||||||  || ||||||||||||| || | ||||||| |||||||| |||||||||||||||||||  ||    
T  35161978 acaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaattatg-atttaaccaaatttaatggcatttttgaatttcaaatcatgt 35162076  T
Q  119 accctt 124  Q
    ||||||    
T  35162077 accctt 35162082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 4865144 - 4865248
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||  ||    
T  4865144 acaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatggcatttttgaatttcaaatcatgt 4865242  T
Q  119 accctt 124  Q
    ||||||    
T  4865243 accctt 4865248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 55041558 - 55041454
Alignment:
Q  19 acaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagt 118  Q
    |||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | |||||||||||||||| |||||||||||||||||||  ||    
T  55041558 acaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaatggcatttttgaatttcaaatcatgt 55041460  T
Q  119 accctt 124  Q
    ||||||    
T  55041459 accctt 55041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 23217078 - 23217047
Alignment:
Q  39 aaaaccctaatccttgatttagagcgggaaaa 70  Q
    ||||||||||||||||||||||||||||||||    
T  23217078 aaaaccctaatccttgatttagagcgggaaaa 23217047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 269
Target Start/End: Original strand, 17830885 - 17831116
Alignment:
Q  38 caaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatttttgaatttcaaatccagtacccttca--acctagcgc 135  Q
    |||||||||||||||||  || |||||||||||| ||| | ||||||| |||||||  ||||||||||||||||||||  ||||||| |  || ||||||    
T  17830885 caaaaccctaatccttgcatttgagcgggaaaat-gtg-atttaaccatatttaattgcatttttgaatttcaaatcctatacccttaatgacatagcgc 17830982  T
Q  136 tctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccgattctgcctatgaatatgaagagtctctaaattgctaat 235  Q
      ||||| |||| ||| | ||||||||||     |||  |||||| | ||| |||||    | ||||   |||| ||||||||||||||| |||||||||    
T  17830983 ggtaaactatccctcacggccattaaatgcactctttagtttttccaaactatttgcatgaaatctgtacatgactatgaagagtctctacattgctaat 17831082  T
Q  236 caatgtttctaatttttcaatataacagttacca 269  Q
    |||||||||  | ||| ||||  |||||||||||    
T  17831083 caatgtttcctactttccaatgaaacagttacca 17831116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 11074905 - 11074936
Alignment:
Q  39 aaaaccctaatccttgatttagagcgggaaaa 70  Q
    ||||||||||||||||||||||||||||||||    
T  11074905 aaaaccctaatccttgatttagagcgggaaaa 11074936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 11178441 - 11178486
Alignment:
Q  79 ttaaccacatttaatgccatttttgaatttcaaatccagtaccctt 124  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||    
T  11178441 ttaacctcacttaatgccatttttgaatttcaaatcatgtaccctt 11178486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 32444557 - 32444602
Alignment:
Q  79 ttaaccacatttaatgccatttttgaatttcaaatccagtaccctt 124  Q
    |||||| || ||||||||||||||||||||||||||| ||| ||||    
T  32444557 ttaacctcacttaatgccatttttgaatttcaaatcctgtatcctt 32444602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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