View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_15 (Length: 300)
Name: NF5989_high_15
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 43610285 - 43610554
Alignment:
| Q |
7 |
tcgaagaatatggttggatattcgaatcaacttcaactttaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgccgaaata |
106 |
Q |
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| T |
43610285 |
tcgaacaatatggttggatatccaaatcaactttaacttcaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgttgaaata |
43610384 |
T |
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| Q |
107 |
cgcatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactctataataaaatcctctcactcatctcattcataagctaatttg |
206 |
Q |
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| T |
43610385 |
cacatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactc--taataaaatcctctctctcatctcattcataagctaatttg |
43610482 |
T |
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| Q |
207 |
agtgtctaagttattgcacgttccactctctccaatcattgtcctactcacaccgatgagctcagcttaact |
278 |
Q |
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||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43610483 |
agtgtctaagtgattgcacattccactctctccaatcgttgtcctactcacaccgatgagctcagcttaact |
43610554 |
T |
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