View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5989_high_17 (Length: 268)
Name: NF5989_high_17
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_17 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 28595970 - 28596221
Alignment:
| Q |
16 |
ataatctaatctaaaactatattagactccaattatattgtagggtccgttctataattagactctaaagtatgacataagtcactctaatatgatataa |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28595970 |
ataatctaatctaaa-ctatattagactccaattgtattgtagggtccgttctataattagactctaaagtatgacataagtcactctaatatgatataa |
28596068 |
T |
|
| Q |
116 |
tatgaccactcaaatttcagaaggcacgcattctcaagggatgaataagaaatgagagaattggcttgaaaatgcgtagaatagaagatggagaagagaa |
215 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28596069 |
tatgaccactcgaatttcagaaggcacacattctcaagggatgaataagaaatgagagaagtggcttgaaaatgcgtagaatagaagatggagaagagaa |
28596168 |
T |
|
| Q |
216 |
atctcgaaaagccttcatgctttggtacacgaggatttattgctgatagaaat |
268 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28596169 |
atctcgaaaagccttcatactttggtacacgaggatttattgttgatagaaat |
28596221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University