View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5989_high_18 (Length: 256)
Name: NF5989_high_18
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 35850984 - 35851213
Alignment:
| Q |
16 |
tcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850984 |
tcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgt |
35851083 |
T |
|
| Q |
116 |
atcgtccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35851084 |
atcgtccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttc |
35851183 |
T |
|
| Q |
216 |
cgacggaggatcccctgatggtggcgccat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35851184 |
cgacggaggatcccctgatggtggcgccat |
35851213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 35841367 - 35841593
Alignment:
| Q |
16 |
tcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgt |
115 |
Q |
| |
|
|||||| |||||||||| || || |||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35841367 |
tcaaaaacaccgttctcatactccactctgtaaaaaccgatttcataactcataacttttccgatttga---acggtttctgaaaactctttcaaaacac |
35841463 |
T |
|
| Q |
116 |
atcgtccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttc |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
35841464 |
atcgtccaatcaatacaatcggcttcttcaattcaacggttacagtttctttcccttttcttctcggtttccgcggtcgacctctccgttttggtggttc |
35841563 |
T |
|
| Q |
216 |
cgacggaggatcccctgatggtggcgccat |
245 |
Q |
| |
|
||||| | |||||| |||||||||||||| |
|
|
| T |
35841564 |
cgacgcaaaatcccccgatggtggcgccat |
35841593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 13314190 - 13313982
Alignment:
| Q |
37 |
tcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaatag |
136 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
13314190 |
tcgactctgtataaaccaattttataaatcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcgtccaatcaacacaatcg |
13314091 |
T |
|
| Q |
137 |
gcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatgg |
236 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| |
|
|
| T |
13314090 |
gcttcttcatttcaacggttacagtttctttctcttttcttctttatttccgcggtcgacctctccttttcggtggttctgacggaggatcccccgatgg |
13313991 |
T |
|
| Q |
237 |
tggcgccat |
245 |
Q |
| |
|
| ||||||| |
|
|
| T |
13313990 |
ttgcgccat |
13313982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 13313483 - 13313712
Alignment:
| Q |
16 |
tcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgt |
115 |
Q |
| |
|
|||||| ||| |||||| | ||||||||||||||||||||||| | ||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13313483 |
tcaaaaacactgttctcaaactcgactctgtataaaccgattttatgactcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgt |
13313582 |
T |
|
| Q |
116 |
atcgtccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttc |
215 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||| ||| | || || |
|
|
| T |
13313583 |
atcgtccaatcaatacaatcggcttattcatttcaacggttccagtttctttctcttttcttctctgcttccgcggtcaaccactccttttcgatgattt |
13313682 |
T |
|
| Q |
216 |
cgacggaggatcccctgatggtggcgccat |
245 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |
|
|
| T |
13313683 |
cgacagaggatcccccgatggtggcgccat |
13313712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 13300934 - 13301051
Alignment:
| Q |
16 |
tcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgt |
115 |
Q |
| |
|
|||||| |||||||||| | |||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| || |||| |||||||||||||||||| |
|
|
| T |
13300934 |
tcaaaaacaccgttctcaaactcgactttgtataaatcgattttgtaactcataacttttctgatttgaacaatgctttct-aaaactctttcaaaacgt |
13301032 |
T |
|
| Q |
116 |
atcgtccaatcaatacaat |
134 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13301033 |
atcgtccaatcaatacaat |
13301051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 13305675 - 13305578
Alignment:
| Q |
42 |
tctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct |
139 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
13305675 |
tctgtgtaaaccgattttataactcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct |
13305578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 13305449 - 13305536
Alignment:
| Q |
41 |
ctctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
134 |
Q |
| |
|
||||| ||||||| ||||| ||||||| || ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
13305449 |
ctctgcataaaccaattttataactcataatttttccgatttga------ctttctgaaaactctttcaaaacacatcgtccaaccaatacaat |
13305536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University