View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_19 (Length: 250)
Name: NF5989_high_19
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28596206 - 28596431
Alignment:
| Q |
1 |
tattgttgatagaaattgaaaatttttgagagaaaa-aattaaggttgtggaattttaaacaataagacaaaatatattctatgaatcaatgaacctaag |
99 |
Q |
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| T |
28596206 |
tattgttgatagaaattgaaaattttcgagagaaaaaaattaaggttgtggaattttaaacaataagacaaaatatattctatgaatcaatgaacctaag |
28596305 |
T |
|
| Q |
100 |
agnnnnnnnnnttaaggttgtggcacatatcaacttaatcctaatatatggatcgatgaacctatgaatcaacgtattctatgcattatttgttatagtg |
199 |
Q |
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| T |
28596306 |
ag--aaaaaaattaaggttgtggcacata-----ttaatcctaatatatggatcgatgaacctatgaatcaacgtattctaagcattatttgttatagtg |
28596398 |
T |
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| Q |
200 |
cttgcnnnnnnngaatatcagttatagtgaatc |
232 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
28596399 |
cttgctttttttgaatatcagttatagtgaatc |
28596431 |
T |
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