View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_26 (Length: 236)
Name: NF5989_high_26
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 1350947 - 1350755
Alignment:
| Q |
16 |
aataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaa |
115 |
Q |
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| T |
1350947 |
aataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaa |
1350848 |
T |
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| Q |
116 |
ttgagtagatagcacaagcaatgtcacagaactagaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
208 |
Q |
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| T |
1350847 |
ttgagtagatagcacaagcaatgtcacagaactagaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
1350755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 1361468 - 1361399
Alignment:
| Q |
17 |
ataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaagacc |
87 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||| |
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| T |
1361468 |
ataaaacttgacaaacttgagcatttttaacattgagtaaccaaacagtaataca-cgacttcacaagacc |
1361399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 1361318 - 1361280
Alignment:
| Q |
158 |
ataattgttgagaagagttttgttcataaggttactcat |
196 |
Q |
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||||||||||||||||||||| | ||||||||||||||| |
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| T |
1361318 |
ataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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