View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_4 (Length: 466)
Name: NF5989_high_4
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 170 - 466
Target Start/End: Complemental strand, 33634084 - 33633788
Alignment:
| Q |
170 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
269 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
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| Q |
270 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
369 |
Q |
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| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
33633885 |
T |
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| Q |
370 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggc |
466 |
Q |
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| T |
33633884 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttacaggaagaacactatgtttcgaagctgaatttctcgtggc |
33633788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 33634242 - 33634151
Alignment:
| Q |
15 |
aagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
106 |
Q |
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| T |
33634242 |
aagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 170 - 412
Target Start/End: Original strand, 29191750 - 29191991
Alignment:
| Q |
170 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
269 |
Q |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
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| Q |
270 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
369 |
Q |
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| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaa |
29191948 |
T |
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| Q |
370 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcgg |
412 |
Q |
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| T |
29191949 |
ttttgattatcggaagtgacgaagcttgattcagtgttttcgg |
29191991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 10668440 - 10668386
Alignment:
| Q |
412 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggc |
466 |
Q |
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| T |
10668440 |
gtgaaatttgttgtgtaggaagaacactatgtttcgaagctgaatttctcgtggc |
10668386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 29192206 - 29192260
Alignment:
| Q |
412 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggc |
466 |
Q |
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| T |
29192206 |
gtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggc |
29192260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 29191591 - 29191683
Alignment:
| Q |
20 |
gaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
103 |
Q |
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| T |
29191591 |
gaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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