View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_5 (Length: 465)
Name: NF5989_high_5
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 36541177 - 36541634
Alignment:
| Q |
16 |
agtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgaggaagagatggttccttta |
115 |
Q |
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| T |
36541177 |
agtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgaggaagagatggttccttta |
36541276 |
T |
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| Q |
116 |
atcaaaacctagttcatgaaaattagtgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatcttgat---nnnnnnnnnn |
212 |
Q |
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| T |
36541277 |
atcaaaacctagttcatgaaaattactgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatcttgatcaaaataaaaaaa |
36541376 |
T |
|
| Q |
213 |
nttgaaatttgaagttcataattttcaaagtcactatgtgagtcattcgaccttttctcaaaaacataagta-------------aataatcaattacaa |
299 |
Q |
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| T |
36541377 |
attgaaatttgaagttcataattttcaaaatcactatgtgagtcattcgaccttttctcaaaaacataagtaaattaccaattataataatcaattacaa |
36541476 |
T |
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| Q |
300 |
ctacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactccgtgagactcatcatcatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36541477 |
ctacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactccgtgagactcatcatcatc |
36541576 |
T |
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| Q |
400 |
gtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
457 |
Q |
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| T |
36541577 |
gtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
36541634 |
T |
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