View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_high_8 (Length: 425)
Name: NF5989_high_8
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 36580224 - 36579826
Alignment:
| Q |
11 |
caaaggttttggtagaaatattttgttggctggtgtatttttattttnnnnnnnn-cttgtcacaactcaactaaaaaaggatttggagttgtcatgaac |
109 |
Q |
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| T |
36580224 |
caaaggttttggtagaaatattttgttggctggtgtatttttattttaaaaaaaaacttgtcacaactcaactaaaaaaggatttggagttgtcatgaac |
36580125 |
T |
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| Q |
110 |
tttaaagttttgtgtagtgaaaaccnnnnnnnnnngatttggattaatcactatcagtttttagtttaaaatgatatgacaatcgaacaaaaagaggttt |
209 |
Q |
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| T |
36580124 |
tttaaagttttgtgtagtgaaaaccaaaaaaaaa-gatttggattaatcactatcagtttttagtttaaaatgatatgacaatcgaacaaaaagaggttt |
36580026 |
T |
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| Q |
210 |
tggagttgtcatcaattttaaaacttgtacaagaatcaaaccaaaagatgatttagattttagaataatcactattaatttttattaaaataataaaaac |
309 |
Q |
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| T |
36580025 |
tggagttgtcatcaattttaaaacttgtacaacaatcaaaccaaaagatgatttagattttagaataatcactattaatttttattaaaataataaaaac |
36579926 |
T |
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| Q |
310 |
ttttgaacttaaaatcatgtgatttataattggtaaaattggtttctattaaaggatagataggttgtaagnnnnnnngtgtagagatatttgaaaaatg |
409 |
Q |
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| T |
36579925 |
ttttgaacttaaaatcatgtgatttataattggtaaaattggtttctattaaaggatagataggttgtaagaaataaagtgtagagatatttgaaaaatg |
36579826 |
T |
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