View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_10 (Length: 405)
Name: NF5989_low_10
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 40543798 - 40543402
Alignment:
| Q |
1 |
ttgtggtgtttacgtaatttaatataacgttggaatttggatttgaaaaaaggaatgaagccatcatttatcttttgcttttgggacnnnnnnngtgttt |
100 |
Q |
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| T |
40543798 |
ttgtggtgtttacgtaatttaatataacgttggaatttggatttgaaaaaaggaatgaagccatcatttatcttttgcttttgggactttttttgtgttt |
40543699 |
T |
|
| Q |
101 |
agcttttcagagtgtgttagtttgaatttagttaccggggaatatgggttccgttggataacggttatgaaggaaaatggtggcattgctt-------gc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40543698 |
agcttttcagagtgtgttagtttgaatttagttaccggggaatatgggttccgttggataacggttatgaaggaaaatggtggcattgcttattgcttgc |
40543599 |
T |
|
| Q |
194 |
ttttgagtttgagtgcgtagagacgtcaaagtagggtctttgtattgcatgcgaagcaccgataagacaacgtttttaaggccattttattattcaacca |
293 |
Q |
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| T |
40543598 |
ttttgagtttgagtgcgtagagacgtcaaagtagggtctttgtattgcatgcgaagcaccgataagacaacgtttttaaggccattttattattcaacca |
40543499 |
T |
|
| Q |
294 |
ttatatttggggtctcttatgtttgaatgccttatatttaaattcacacattcaacaactcattttatttttatctttctcttcttattacaatctg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40543498 |
ttatatttggggtctcttatgtttgaatgccttatatttaaattcacacattcaacaactcattttatttttatctttctcttcttattacaatctg |
40543402 |
T |
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