View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_11 (Length: 359)
Name: NF5989_low_11
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 5417392 - 5417702
Alignment:
| Q |
25 |
taattgaagtaagactgatactacaattgaatattgtcgaatatgactcatagaagtaatgctgcaatccaaacgacatgtattttaatacaagttgtac |
124 |
Q |
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| T |
5417392 |
taattaaagtaagactgatactacacttgaatattgtcgaatatgactcatagaagtaatgctgcaatccaaacgacatgtattttaatacaagttgtac |
5417491 |
T |
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| Q |
125 |
actattgtaaacctatgacattgaaataattgaatatttatattaatttgtaatgcacggtcgatacacattatatataaaattcaattgtaaaattctt |
224 |
Q |
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| T |
5417492 |
actatcgtaaacctatgccattgaaataattgaa----tatattaatttgtaatgcacggtcgatacacattatatataaaattcaattgt-aaattctt |
5417586 |
T |
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| Q |
225 |
cccattttattaaacgtgtatttacaattgaatgtgtttttctagagggtacattgagagtctagcatgggctagacacaacaatgggcttgctacgaag |
324 |
Q |
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| T |
5417587 |
tctattttattacatgtgtatttacaattgaatgtgtttttctagagggtacattgagagtct-gcatgggctacacacaacaatgggtttgctacgaag |
5417685 |
T |
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| Q |
325 |
agttgctcctatatagt |
341 |
Q |
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| T |
5417686 |
agttgctccaatatagt |
5417702 |
T |
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