View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_12 (Length: 316)
Name: NF5989_low_12
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 50212926 - 50212626
Alignment:
| Q |
16 |
aatgaaactctctacaaggcttggctttcctcacaaactttattgcctgtttactgtattgatcctcggctatttgcaaccacttaccatttcggatttc |
115 |
Q |
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| T |
50212926 |
aatgaaactctctacaaggcttggctttcctcacaaactttattgcctgtttactgtattgatcctcggctatttgcaaccacttaccatttcggatttc |
50212827 |
T |
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| Q |
116 |
caaaaactggaggtatattcttttttcgataacgtcttttatctcttttcttcaatgacattgacactatttattagttaaaactctgctctaagtagtg |
215 |
Q |
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| T |
50212826 |
caaaaactggaggtatattcttttttcgataacgtcttttatctcttttcttcaatgacattgacactatttattagttaaaactctgctctaagtagtg |
50212727 |
T |
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| Q |
216 |
tgtcaaaaaatactatacttttatagtacaaacttgtacactaagccagcggtttgaccttgctgaactgagcctgaatgttacatttgtcagcgttgtg |
315 |
Q |
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| T |
50212726 |
tatcaaaaaatactatacttttatagtacaaacttgtacactaagctatcggtttgaccttgctgaactgagcctgaatgtaacatttgtcagcgttgtg |
50212627 |
T |
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| Q |
316 |
c |
316 |
Q |
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| T |
50212626 |
c |
50212626 |
T |
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