View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_13 (Length: 309)
Name: NF5989_low_13
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 15841086 - 15840806
Alignment:
| Q |
18 |
caatgaggatatgggctgagaccatagcccagttctcacaacccccaagcatcaagcttgaaaggatgaaatgcttagagttattaggttaactcgggcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841086 |
caatgaggatatgggctgagaccatagcccagttctcacaacccccaagcatcaagcttgaaaggatgaaatgcttagagttattaggttaactcgggcc |
15840987 |
T |
|
| Q |
118 |
gatcctttagcgcagtccatgtagtatgtatacgaaacactaataagagcaatatatgtgaggcaatcaagcccgtagattttgaatgcgatgcttgtca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15840986 |
aatcctttagcgcagtccatgtagtatgtatacgaaacactaataagagcaatatatgtgaggcaatcaagcccgtagattttgaatgcgatgcttgtca |
15840887 |
T |
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| Q |
218 |
ttcatactagctacacaactaaggttgatatttgcaggtttgcaagtcactgatgggcttttttcccccacatttgttcat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15840886 |
ttcatactagctacacaactaaggttgatatttgcaggtttgcaagtcactgatgggcttttttcccccacatttgttcat |
15840806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 15826847 - 15826632
Alignment:
| Q |
18 |
caatgaggatatgggctgagaccatagcccagttctcacaacccccaagcatcaagcttgaaaggatgaaatgcttagagttattaggttaactcgggcc |
117 |
Q |
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|||||||||||||| | |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| | ||||||||| |||||||||||||| |
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| T |
15826847 |
caatgaggatatggaccgagaccatagcccagttc--acaacccccaagcatgaagcctgaaaggatgaaatgttcagagttattgggttaactcgggcc |
15826750 |
T |
|
| Q |
118 |
gatcctttagcgcagtccatgtagtatgtatacgaaacactaataagagcaatatatgtgaggcaatcaagcccgtagattttgaatgcgatgcttgtca |
217 |
Q |
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||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
15826749 |
gatcctttagctcagtccacgtagtatgtatatggaacactaataagagcaatatatgtgaggcaaacaagcccgtaaattttgaatgtgatgcttgtca |
15826650 |
T |
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| Q |
218 |
ttcatactagctacacaa |
235 |
Q |
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|||||||||||||||||| |
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| T |
15826649 |
ttcatactagctacacaa |
15826632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 291
Target Start/End: Complemental strand, 15821228 - 15821086
Alignment:
| Q |
149 |
acgaaacactaataagagcaatatatgtgaggcaatcaagcccgtagattttgaatgcgatgcttgtcattcatactagctacacaactaaggttgatat |
248 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||| || |||||||||| |||||||| ||||| | ||| || || ||||||||| | |
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| T |
15821228 |
acgaaacactaataagagtaatatatgtgaggcaaaaaagcccatatattttgaatgtgatgcttggcattcgttctaacttggaaatgaaggttgatct |
15821129 |
T |
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| Q |
249 |
ttgcaggtttgcaagtcactgatgggcttttttcccccacatt |
291 |
Q |
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|||||| ||||| || ||||| |||||||| |||||||||||| |
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| T |
15821128 |
ttgcagatttgccagccactgctgggctttgttcccccacatt |
15821086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 15826626 - 15826588
Alignment:
| Q |
260 |
caagtcactgatgggcttttttcccccacatttgttcat |
298 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||| |
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| T |
15826626 |
caagtcaccgatgggcttttttccccaacatttgttcat |
15826588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 47448353 - 47448397
Alignment:
| Q |
139 |
tagtatgtatacgaaacactaataagagcaatatatgtgaggcaa |
183 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
47448353 |
tagtatttatacgaaatactaataagagcagtatatgtgaggcaa |
47448397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 47448431 - 47448487
Alignment:
| Q |
237 |
taaggttgatatttgcaggtttgcaagtcactgatgggcttttttcccccacatttg |
293 |
Q |
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||||| |||| ||||| ||||||| ||||||| ||| ||||| |||||||||||||| |
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| T |
47448431 |
taaggctgatctttgccggtttgccagtcactaatgtgctttgttcccccacatttg |
47448487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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