View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5989_low_14 (Length: 301)

Name: NF5989_low_14
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5989_low_14
NF5989_low_14
[»] chr8 (8 HSPs)
chr8 (30-280)||(1350488-1350738)
chr8 (67-193)||(1361149-1361275)
chr8 (82-153)||(1344085-1344156)
chr8 (82-153)||(1355431-1355502)
chr8 (238-279)||(1344031-1344072)
chr8 (238-279)||(1355515-1355556)
chr8 (165-209)||(1344023-1344067)
chr8 (165-209)||(1355520-1355564)
[»] chr3 (2 HSPs)
chr3 (165-209)||(24618411-24618455)
chr3 (101-153)||(24618473-24618525)
[»] chr2 (1 HSPs)
chr2 (97-147)||(43364446-43364496)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 1350738 - 1350488
Alignment:
Q  30 catataaccaaatcaacaattatgcaacgatatcctggtgattgtcacgatatctaagagtttattttattctctcttccaaagtgcaatttaatctgcg 129  Q
    |||||||| | |||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1350738 catataacaacatcaacaactatgcaacgatatcccggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcg 1350639  T
Q  130 cgcaaattcttccacttctctgtcggtcatcgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatt 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350638 cgcaaattcttccacttctctgtcggtcattgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatt 1350539  T
Q  230 tttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350538 tttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc 1350488  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 1361275 - 1361149
Alignment:
Q  67 gtgattgtcacgatatctaagagtttattttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcc 166  Q
    ||||||||||| || ||||||| ||| |||||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||| |||||   |||     
T  1361275 gtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcattaagtca 1361176  T
Q  167 tgatcaatctcatcatcaaactcaacc 193  Q
    |||||||||||||||||||||||||||    
T  1361175 tgatcaatctcatcatcaaactcaacc 1361149  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 1344156 - 1344085
Alignment:
Q  82 tctaagagtttattttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 153  Q
    ||||||| ||| |||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1344156 tctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1344085  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 1355431 - 1355502
Alignment:
Q  82 tctaagagtttattttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 153  Q
    ||||||| ||| |||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1355431 tctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1355502  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 1344072 - 1344031
Alignment:
Q  238 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 279  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1344072 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1344031  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 1355515 - 1355556
Alignment:
Q  238 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 279  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1355515 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1355556  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 1344067 - 1344023
Alignment:
Q  165 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 209  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1344067 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1344023  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 1355520 - 1355564
Alignment:
Q  165 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 209  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1355520 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1355564  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 24618455 - 24618411
Alignment:
Q  165 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 209  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  24618455 cctgatcaatctcatcattaaactcaaccacaggatcatcttctt 24618411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 24618525 - 24618473
Alignment:
Q  101 ctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 153  Q
    ||||||||| |||  || ||||||||||| ||||||||||||||||| |||||    
T  24618525 ctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc 24618473  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 43364446 - 43364496
Alignment:
Q  97 tattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttc 147  Q
    ||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  43364446 tattctctcttgcaaggaacaatttaatctgcgggcaaattcttccacttc 43364496  T

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