View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_16 (Length: 279)
Name: NF5989_low_16
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 26323369 - 26323624
Alignment:
| Q |
18 |
ctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatccgtggccaaattgaaccaagaaac |
117 |
Q |
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| T |
26323369 |
ctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatccgtggccaaattgaaccaagaaac |
26323468 |
T |
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| Q |
118 |
caaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaaccaccctgcaagccataatatcaaggatcatttgaagcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26323469 |
caaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaaccaccctgcaagccataatatcaaggatcatttgaagcca |
26323568 |
T |
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| Q |
218 |
tgttgcgcgggagtaagcagtcagtataattgtggaagtgtagacgagaataatgt |
273 |
Q |
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| T |
26323569 |
tgttgcgcgggagtaagcagtcagtataattgtggaagtgtagacgagaataatgt |
26323624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 26329477 - 26329720
Alignment:
| Q |
18 |
ctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatccgtggccaaattgaaccaagaaac |
117 |
Q |
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| T |
26329477 |
ctgaaacctcattccaaagttgcaatagtacatttaacgacctcgtagctctccacaataacctattgaaccaatctgttacaaagttaaatcaagaaac |
26329576 |
T |
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| Q |
118 |
caaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaaccaccctgcaagccataatatcaaggatcatttgaagcca |
217 |
Q |
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| T |
26329577 |
caatgatcacaccacattcacaattctagacattttcgatagtttcaagtcagtgttgaatcacccttctagccataacattaaggaacgtttgaaacca |
26329676 |
T |
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| Q |
218 |
tgttgcgcgggagtaagcagtcagtataattgtggaagtgtaga |
261 |
Q |
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| T |
26329677 |
tgttgcgtcggagtaagcagtgagtataagtgtggaagtgtaga |
26329720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 26336808 - 26337033
Alignment:
| Q |
36 |
gttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatccgtggccaaattgaaccaagaaaccaaggatcacaccacctt |
135 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||||| ||| |||| ||||| | | || ||||||||||||||||| ||||||||||| || |
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| T |
26336808 |
gttgcaatagtacatttaatgaccttgtagctctccgcaacaatctaatgaaacaatctattacaaagttgaaccaagaaaccaaagatcacaccacatt |
26336907 |
T |
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| Q |
136 |
tacaattctagacatttttgacagttttgcgtcggtgttgaaccaccctgcaagccataatatcaaggatcatttgaagccatgttgcgcgggagtaagc |
235 |
Q |
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||||| |||| | |||| || ||||| |||||||||||| |||||| |||||||||| || ||||| | |||||||||||||||| ||||||||| |
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| T |
26336908 |
cacaatcctaggccttttcgatagtttcaggtcggtgttgaatcacccttcaagccataacattaaggaacgtttgaagccatgttgcatcggagtaagc |
26337007 |
T |
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| Q |
236 |
agtcagtataattgtggaagtgtaga |
261 |
Q |
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| |||||| || |||||||||||| |
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| T |
26337008 |
gatgagtatacttatggaagtgtaga |
26337033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 26343170 - 26343227
Alignment:
| Q |
36 |
gttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatc |
93 |
Q |
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||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |
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| T |
26343170 |
gttgcaatagtacatttaatgaccttgtagctctccacaacaatctattgaaccaatc |
26343227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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