View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5989_low_2 (Length: 666)
Name: NF5989_low_2
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Original strand, 6194142 - 6194730
Alignment:
| Q |
19 |
acaaaccaccatgctatagcatttgagcccaaagatccaagaagtttcttccttttaaattctcaaatcatatggtaggttactaaaagcaaatatctga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194142 |
acaaaccaccatgctatagcatttgagcccaaagatccaagaagtttcttccttttaaattctcaaatcatatggtaggttactaaaagcaaatatctga |
6194241 |
T |
|
| Q |
119 |
tactataagacatcacaatttaccttcatgagagagttgtgaattgattcgacgacatcttcgcatgacctgtaagcacagggcaatattaagttaccac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194242 |
tactataagacatcacaatttaccttcatgagagagttgtgaattgattcgacgacatcttcgcatgacctgtaagcacagggcaatattaagttaccac |
6194341 |
T |
|
| Q |
219 |
ataaatgagtaaatattgcatccagaatagccagagtgtgcaatggtaacataccctcccgacaaaatttgagtcaagcaaaaatctcctaaatcttttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194342 |
ataaatgagtaaatattgcatccagaatagacagagtgtgcaatggtaacataccctcccgacaaaatttgagtcaagcaaaaatctcctaaatcttttg |
6194441 |
T |
|
| Q |
319 |
ctaacaagctccagtcacggcggacaatatcaagacctttgcgttcaataacctgcaccatatgttaatcctacaggcatgttcttctaaaatgttagat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194442 |
ctaacaagctccagtcacggcggacaatatcaagacctttgcgttcaataacctgcaccatatgttaatcctacaggcatgttcttctaaaatgttagat |
6194541 |
T |
|
| Q |
419 |
gatgcaaaataataagatagacatacctcatatggggtgccatctttaaactgcaccttaacagctgcatatttctttttcttgagaagtagcatcctct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194542 |
gatgcaaaataataagatagacatacctcatatggggtgccatctttaaactgcaccttaacagctgcatatttctttttcttgagaagtagcatcctct |
6194641 |
T |
|
| Q |
519 |
tgtacaaaccatcaagatcaatttctaagcaccgatatttcttattgacctaatgacaaattaaaggagaaattacagatcattcgatc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6194642 |
tgtacaaaccatcaagatcaatttctaagcaccgatatttcttattgacctaatgacaaattaaaggagaaatcacagatcattcgatc |
6194730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University