View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_22 (Length: 245)
Name: NF5989_low_22
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 750861 - 751088
Alignment:
| Q |
1 |
accaacaccacaaccaagtaagattctgccaacaatgagcatagcaaggttttgagcagcagcattgaatgcaactccagcaatgaagaaaaatccggca |
100 |
Q |
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| T |
750861 |
accaacaccacaaccaagtaagattctgccaacaatgagcatggcaaggttttgagcagcagcattgaatgcaactccagcaatgaagaaaaatccggca |
750960 |
T |
|
| Q |
101 |
atcaacatggtgagtcttctccccattgttcgagttgtataggatgcaaagaaagttgaagttaatgcagctaggtataaggatgatgtaaataactgca |
200 |
Q |
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| T |
750961 |
atcaacatggtgagtcttctccccattgttcgagttgtataggatgcaaagaaagttgaagttaatgcagctaggtataaggatgatgtaaataactgca |
751060 |
T |
|
| Q |
201 |
atccttgattatcatatttgcagtaatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
751061 |
atccttgattatcatatttgcagtaatt |
751088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 10794317 - 10794497
Alignment:
| Q |
12 |
aaccaagtaagattctgccaacaatgagcatagcaaggttttgagcagcagcattgaatgcaactccagcaatgaagaaaaatccggcaatcaacatggt |
111 |
Q |
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| T |
10794317 |
aaccaagtaagattctgccaataatgagcatagcaaggttctgagctgcagcattgaatgcaactccagcaatgaa-----------------acatggt |
10794399 |
T |
|
| Q |
112 |
gagtcttctccccattgttcgagttgtataggatgcaaagaaagttgaagttaatgcagctaggtataaggatgatgtaaataactgcaatccttgat |
209 |
Q |
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| T |
10794400 |
gagtcttccccccaacgtacgagtggtataggatgcaaagaaagtggaagttaatgcagctagttacaaggatgatgtaaataactgcaatccttgat |
10794497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 47208174 - 47208041
Alignment:
| Q |
8 |
ccacaaccaagtaagattctgccaacaatgagcatagcaaggttttgagcagcagcattgaatgcaactccagcaatgaagaaaaatccggcaatcaaca |
107 |
Q |
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||||| |||||||||| || ||||| |||||||| |||||||||||||| ||||| | ||||||||| ||||||||||| || |||||||||| |
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| T |
47208174 |
ccacagccaagtaagaccctaccaacgatgagcatgagaaggttttgagcagatgcattaagactaactccagctatgaagaaaaagccagcaatcaaca |
47208075 |
T |
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| Q |
108 |
tggtgagtcttctccccattgttcgagttgtata |
141 |
Q |
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| T |
47208074 |
ttgtgagccttctccctagtactcgagttgtata |
47208041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47184394 - 47184357
Alignment:
| Q |
1 |
accaacaccacaaccaagtaagattctgccaacaatga |
38 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| |
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| T |
47184394 |
accaacaccacaaccaagtatgattctgccaagaatga |
47184357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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