View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5989_low_26 (Length: 237)
Name: NF5989_low_26
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_26 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| |
|
| [»] scaffold1268 (1 HSPs) |
| |
|
| [»] scaffold1267 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 35869330 - 35869128
Alignment:
| Q |
35 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
134 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35869330 |
caaaagcctcatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35869231 |
T |
|
| Q |
135 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccga |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35869230 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacctga |
35869131 |
T |
|
| Q |
235 |
tgg |
237 |
Q |
| |
|
||| |
|
|
| T |
35869130 |
tgg |
35869128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 35776420 - 35776204
Alignment:
| Q |
21 |
ctacgcatatccaacaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||| |
|
|
| T |
35776420 |
ctacgcatattcaacaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaacttgccaaactctttcgttgcaa |
35776321 |
T |
|
| Q |
121 |
cggttttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaattt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
35776320 |
aggttttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatcgcttggacaagactttgtgaagggtctaccagattttcaattt |
35776221 |
T |
|
| Q |
221 |
gagaccatacccgatgg |
237 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
35776220 |
gagactatacccgatgg |
35776204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 35854721 - 35854519
Alignment:
| Q |
35 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
134 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35854721 |
caaaagcctcatgttgtattagtaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35854622 |
T |
|
| Q |
135 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
35854621 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaagactttgtgaatggtctaccagattttcaatttgagaccatacctga |
35854522 |
T |
|
| Q |
235 |
tgg |
237 |
Q |
| |
|
||| |
|
|
| T |
35854521 |
tgg |
35854519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 35842213 - 35842064
Alignment:
| Q |
35 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
134 |
Q |
| |
|
|||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35842213 |
caaaagccacatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
35842114 |
T |
|
| Q |
135 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35842113 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga |
35842064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 35759981 - 35759779
Alignment:
| Q |
35 |
caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa |
134 |
Q |
| |
|
||||||| ||||||||||| || |||| |||| ||| |||||||| || || || |||||| |||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
35759981 |
caaaagctacatgctgtattagtgccatacccagcacagggtcatgttaatcccttaatgcaactagctaaactcctgcgttgcaacggtttccacataa |
35759882 |
T |
|
| Q |
135 |
cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccga |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || |||||| || | | |||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
35759881 |
cctttgtgaacactgaattcaaccacaaacgtttggtaaactcacttggacaagattatatgaatggtctaccagattttcaatttgagaccatacctga |
35759782 |
T |
|
| Q |
235 |
tgg |
237 |
Q |
| |
|
||| |
|
|
| T |
35759781 |
tgg |
35759779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 35738157 - 35737954
Alignment:
| Q |
34 |
acaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaac---ggttttcac |
130 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| ||||||||| || |||||||||||||||||||| ||| |||| | ||| ||||| ||| |
|
|
| T |
35738157 |
acaaaagcctcatgtagtttgtgtaccatttccagcacaaggtcacgtaaaccctttcatgcaattagctaaaatcct---taacaaacttggtttccac |
35738061 |
T |
|
| Q |
131 |
ataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatac |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||| |||||||||| |||||||| |||| |
|
|
| T |
35738060 |
ataacctttgtgaacaatgaattcaaccacaaacgtttgataaaatctcttggacatgactttttaaagggtcaaccagattttaggtttgagactatac |
35737961 |
T |
|
| Q |
231 |
ccgatgg |
237 |
Q |
| |
|
| ||||| |
|
|
| T |
35737960 |
cagatgg |
35737954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 1828 - 2027
Alignment:
| Q |
26 |
catatccaacaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggtt |
125 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||| | |||||||| |||| |
|
|
| T |
1828 |
catacccaacaaaaaccacatgctgtatttgtaccatttccagcacaaggtcatgtgaacccaatgatgcaactagccaaactcttccgttgcaaaggtt |
1927 |
T |
|
| Q |
126 |
ttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagac |
225 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1928 |
tccatataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagac |
2027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 1 - 92
Alignment:
| Q |
146 |
actgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccgatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1 |
actgaattcaaccacaaacgtttgataaaatctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacctgatgg |
92 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 1 - 62
Alignment:
| Q |
176 |
tctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccgatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1 |
tctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacctgatgg |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 1 - 62
Alignment:
| Q |
176 |
tctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacccgatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1 |
tctcttggagctgagtttgtgaagggtctaccagattttcaatttgagaccatacctgatgg |
62 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 4482335 - 4482283
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatc |
177 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| ||||||| |
|
|
| T |
4482335 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatc |
4482283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4575925 - 4575881
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
4575925 |
tttcacataacctttgttaacactgaatacaatcacaaacgtttg |
4575881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4627620 - 4627576
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
4627620 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
4627576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 4258831 - 4258878
Alignment:
| Q |
122 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
4258831 |
ggttttcacataacctttgtcaacactgaatataatcacaaacgtttg |
4258878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 3173473 - 3173433
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
3173473 |
tttcacataacctttgtaaacactgaatacaatcacaaacg |
3173433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 4265715 - 4265755
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
4265715 |
tttcacataacctttgtcaacactgaatacaatcacaaacg |
4265755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 4462680 - 4462640
Alignment:
| Q |
122 |
ggttttcacataacctttgtgaacactgaattcaaccacaa |
162 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
4462680 |
ggttttcacataacctttgtcaacactgaatacaatcacaa |
4462640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 4488855 - 4488895
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
4488855 |
tttcacataacctttgtcaacactgaatacaatcacaaacg |
4488895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4513637 - 4513681
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
4513637 |
tttcacataacctttgttaacaccgaatacaatcacaaacgtttg |
4513681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4517810 - 4517766
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
4517810 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
4517766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 4558595 - 4558555
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
4558595 |
tttcacataacctatgtaaacactgaatacaaccacaaacg |
4558555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 4587102 - 4587062
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
4587102 |
tttcacataacctttgtaaacactgaatacaatcacaaacg |
4587062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4594480 - 4594436
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| || ||||||||| |
|
|
| T |
4594480 |
tttcacataacctttgtcaacactgaatacaatcataaacgtttg |
4594436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4603580 - 4603536
Alignment:
| Q |
125 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
169 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
4603580 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
4603536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 1349579 - 1349615
Alignment:
| Q |
129 |
acataacctttgtgaacactgaattcaaccacaaacg |
165 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacg |
1349615 |
T |
|
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