View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5989_low_6 (Length: 452)
Name: NF5989_low_6
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 43091653 - 43091215
Alignment:
| Q |
1 |
tccctcccattgatgtgtagtcaccagcaaaactctttacattcacactaccctttacttcttcttcatttctcttactcttcaagttagctatagaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091653 |
tccctcccattgatgtgtagtcaccagcaaaactctttacattcacactaccctttacttcttcttcatttctcttactcttcaagttagctatagaacc |
43091554 |
T |
|
| Q |
101 |
attactagatttcatggcctttgaatttgaagtgggtttagtacaannnnnnnggttatgaggaacatattgatgatctttgaagggaatgagtttgcca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091553 |
attactagatttcatggcctttgaatttgaagtgggtttagcacaatttttttggttatgaggaacatattgatgatctttgaagggaatgagtttgcca |
43091454 |
T |
|
| Q |
201 |
cagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaactcaaacaagttnnnnnnnnnnnnnnnnnnnnggtgatccttgccat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43091453 |
cagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaactcaaacaagttatcatcatcatcatcatcatggtgatccttgccat |
43091354 |
T |
|
| Q |
301 |
aattggaaaaatcacctcgttgaggtgaaattgtggaatttggaaggtcacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtag |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091353 |
aattggaaaaatcaccccgttgaggtgaaattgtggaatttggaaggtcacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtag |
43091254 |
T |
|
| Q |
401 |
caaagtactttcttcattccctacttcttcatgtgagta |
439 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
43091253 |
caaagtactttcttcattccctacttcttgatgtgagta |
43091215 |
T |
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