View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5989_low_7 (Length: 432)
Name: NF5989_low_7
Description: NF5989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5989_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 218 - 422
Target Start/End: Original strand, 40960267 - 40960471
Alignment:
| Q |
218 |
tgctaatcatgtttagtataactgtgactctttcaggttataatcctcctcctgcttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960267 |
tgctaatcatgtttagtataactgtgactctttcaggttataatcctcctcctacttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaac |
40960366 |
T |
|
| Q |
318 |
ttatatacatgaataaaataaaataaaacatgacatgtattctaaaagaaaagcatgatgtacatgcgtcttcttaattactgatttatgctctctctcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960367 |
ttatatacatgaataaaataaaataaaacatgacatgtattctaaaagaaaagcatgatgtacatgcgtcttcttaattactgatttatgctctctctcc |
40960466 |
T |
|
| Q |
418 |
ctttg |
422 |
Q |
| |
|
||||| |
|
|
| T |
40960467 |
ctttg |
40960471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40960001 - 40960196
Alignment:
| Q |
18 |
tcatgttactgccaatatgtgactcctcgtcttatgcaaaatatcagcattgacaaagctttgaatgtagctcgaaattgcgaattgcaagatattccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960001 |
tcatgttactgccaatatgtgactcctcgtcttatgcaaaatatcagcattgacaaagctttgaatgtagctcgaaattgcgaattgcaagatattccta |
40960100 |
T |
|
| Q |
118 |
caggcaaatgtggaagtaagttaat-tttttaaagagcttaacagagtaaattatacacacactaatcagttggttattgaataatattataaact |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960101 |
caggcaaatgtggaagtaagttaatatttttaaagagcttaatagagtaaattatacacacactaatcagttggttattgaataatattataaact |
40960196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 40953520 - 40953661
Alignment:
| Q |
20 |
atgttactgccaatatgtgactcctcgtcttatgcaaaatatcagcattgacaaagctttgaatgtagctcgaaattgcgaattg-caagatattcctac |
118 |
Q |
| |
|
|||||||||||||||||| |||||| ||| || |||||||||||||| |||||||||||| | ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
40953520 |
atgttactgccaatatgtcactcctaaacttgagcgtaatatcagcattgaaaaagctttgaatatcgctggatattgc-aattgccaagatattcctac |
40953618 |
T |
|
| Q |
119 |
aggcaaatgtggaagtaagtt-aat--tttttaaagagcttaa |
158 |
Q |
| |
|
| ||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
40953619 |
ggacaagtgtggaagtaagttcaattatttttaaagagcttaa |
40953661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 40953722 - 40953798
Alignment:
| Q |
261 |
tcctcctcctgcttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaacttatatacatgaataaaataaaa |
340 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
40953722 |
tcctcatcctccttctctaaaggcttgatgcaaaaaattggg---ggcgcatggaacttatatatatgaataaaataaaa |
40953798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 40954224 - 40954279
Alignment:
| Q |
241 |
gtgactctttcaggttataatcctcctcctgcttctccaaaggcttgatgcaaaaa |
296 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
40954224 |
gtgattctttcaggttataatcctcctcctgcttctccgaagactttatgcaaaaa |
40954279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 40945385 - 40945506
Alignment:
| Q |
19 |
catgttactgccaatatgtgactcctcgtcttatgcaaaatatcagcattgacaaagctttgaatgtagctcgaaattgcgaattgcaagatattcctac |
118 |
Q |
| |
|
||||||||||| |||||||||||||| || || | | |||||||| |||||||||||| | ||||| || |||| |||||||| |||||||||| |
|
|
| T |
40945385 |
catgttactgcaaatatgtgactcctagtattgagagtataatcagcatagacaaagctttgtacgtagccaaaacttgccaattgcaaaatattcctac |
40945484 |
T |
|
| Q |
119 |
aggcaaatgtggaagtaagtta |
140 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
40945485 |
agacaagtgtggaagtaagtta |
40945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University