View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5990_high_3 (Length: 246)

Name: NF5990_high_3
Description: NF5990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5990_high_3
NF5990_high_3
[»] chr8 (2 HSPs)
chr8 (11-228)||(26535474-26535691)
chr8 (27-197)||(28215874-28216046)
[»] chr3 (1 HSPs)
chr3 (15-217)||(12783895-12784099)
[»] chr2 (1 HSPs)
chr2 (14-208)||(9752561-9752757)
[»] chr4 (2 HSPs)
chr4 (16-198)||(21046621-21046805)
chr4 (29-197)||(14577866-14578035)
[»] chr5 (2 HSPs)
chr5 (11-109)||(42266013-42266111)
chr5 (26-197)||(17462213-17462385)
[»] scaffold0005 (1 HSPs)
scaffold0005 (29-197)||(239340-239509)
[»] chr7 (1 HSPs)
chr7 (26-109)||(29284735-29284818)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 26535691 - 26535474
Alignment:
Q  11 cagagactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26535691 cagagactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatta 26535592  T
Q  111 gaagcatcgatgcatcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccacatatatgacaccga 210  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26535591 aaagcatcgatgcatcaccatatctctgaaacctgcataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccacatatatgacaccaa 26535492  T
Q  211 agtaaccttgtgaataat 228  Q
    ||||||||||||||||||    
T  26535491 agtaaccttgtgaataat 26535474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 28215874 - 28216046
Alignment:
Q  27 tccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--agaagcatcgatgca 124  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||  |  | |||||||||     
T  28215874 tccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcg 28215973  T
Q  125 tcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccaca 197  Q
    ||||||||||| |||||||| || |||||||||| ||   || ||||||   |||||||||| ||||||||||    
T  28215974 tcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccaca 28216046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 12783895 - 12784099
Alignment:
Q  15 gactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--aga 112  Q
    ||||| ||| || ||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  |      
T  12783895 gactccttcggggccaattagtccaatgccaatcatacgaatgacgaggatttctaagcattctgaagtcagccacaatgactgcgacatatattcaaac 12783994  T
Q  113 agcatcgatgcatcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccacatatatgacaccgaag 212  Q
    |||||| | || |||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||  |||    
T  12783995 agcatcaacgcgtcaccatatctctgaaacctgcataactcaacaactctggatcataatcatcgaaatcaaagacatgaccacatgtacgacacgaaag 12784094  T
Q  213 taacc 217  Q
    |||||    
T  12784095 taacc 12784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 9752561 - 9752757
Alignment:
Q  14 agactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--ag 111  Q
    |||||||||| ||| |||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| | |||| ||| |||||  |     
T  9752561 agactcattcgggttcaattagtccaatgacaatcataagaatgacaaggattccaaagcaatctgaagtcagccacaacgtctgccacaaatattcaaa 9752660  T
Q  112 aagcatcgatgcatcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccacatatatgacacc 208  Q
     |||||||| || ||||| |||||||||||||| || ||||||||| ||||| |||||||||| | |||||| |||||||||||||| |||||||||    
T  9752661 tagcatcgacgcgtcaccttatctctgaaacctgcagaactcaacaactctggatcataatcagcaaaatcagagacatgaccacatgtatgacacc 9752757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 21046805 - 21046621
Alignment:
Q  16 actcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--agaa 113  Q
    |||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||  ||||||||| |||||  |  |    
T  21046805 actctttcaagtccaattagtccaatgtcaattatacgaatgactaggattccaaaacagtctgaagtcagtcacaacaactgcgacaaatattcaaata 21046706  T
Q  114 gcatcgatgcatcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccacat 198  Q
    ||||||| |  ||||||||||| |||||||| || ||||||||| ||||| |||||||| | |||||||||||| ||||||||||    
T  21046705 gcatcgacgtgtcaccatatctttgaaacctgcagaactcaacaactctggatcataattagcgaaatcaaagaaatgaccacat 21046621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 14577866 - 14578035
Alignment:
Q  29 caattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--agaagcatcgatgcatc 126  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||| || || |||| |||||  |  | |||||| || ||    
T  14577866 caattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaacaccatcgacgcgtc 14577965  T
Q  127 accatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccaca 197  Q
    ||||||||| ||| | ||  | ||||||||||||||  || ||||| |  |||||||||||||||||||||    
T  14577966 accatatctttgata-cttgagaactcaacagctctagataataataagagaaatcaaagacatgaccaca 14578035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42266013 - 42266111
Alignment:
Q  11 cagagactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt 109  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||| |||||    
T  42266013 cagagactctttcgagtccaattagtccaatgtcaatcatacgaatgactaggattccaaagcagtctgaaatcagccacaaggactacgacagatatt 42266111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 17462385 - 17462213
Alignment:
Q  26 gtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--agaagcatcgatgc 123  Q
    ||||||||||||||||||||||||||| |||||  | |||||| |||||||||||||| |||||||| |||||| ||| |||||  |  | |||| | ||    
T  17462385 gtccaattagtccaatgtcaatcatacaaatgattaagattcc-aagcagtctgaagttagccacaaggactgcaacaaatattcaaacaacatcaacgc 17462287  T
Q  124 atcaccatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccaca 197  Q
     |||||||||||  ||||||| || ||||||||| ||||| || || ||||  ||||| ||||  |||||||||    
T  17462286 gtcaccatatcttggaaacctgcagaactcaacaactctggataatgatcagagaaattaaaggtatgaccaca 17462213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 239509 - 239340
Alignment:
Q  29 caattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt--agaagcatcgatgcatc 126  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||| || || |||| |||||  |  | |||||| || ||    
T  239509 caattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaacaccatcgacgcgtc 239410  T
Q  127 accatatctctgaaacctacataactcaacagctctgaatcataatcaacgaaatcaaagacatgaccaca 197  Q
    ||||||||| ||| | ||  | ||||||||||||||  || ||||| |  |||||||||||||||||||||    
T  239409 accatatctttgata-cttgagaactcaacagctctagataataataagagaaatcaaagacatgaccaca 239340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 29284818 - 29284735
Alignment:
Q  26 gtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcagtctgaagtcagccacaatgactgcgacatatatt 109  Q
    |||||||||||||||||| |||||||||| | || || ||| |||||||||| ||||||| ||||||  ||||||||| |||||    
T  29284818 gtccaattagtccaatgttaatcatacgacttactagaatttcaaagcagtccgaagtcaaccacaagtactgcgacaaatatt 29284735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University