View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5990_high_4 (Length: 237)
Name: NF5990_high_4
Description: NF5990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5990_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 45887910 - 45887706
Alignment:
| Q |
18 |
cttgttgttgcctttaggatgaaaccatccaaaatctttggaagtgaagaggaatgtgaaagcagtgaatctggatggaccatgtatattgggtcccaca |
117 |
Q |
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| T |
45887910 |
cttgttgttgcctttaggatgaaaccatccaaaatctttggaagtgaagaggaatgtgaaagcagtgaatcgggatggaccatgtatattgggtcccaca |
45887811 |
T |
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| Q |
118 |
tagaagatgataatgatggagatattgataacatcatggatgatgaaggaactactcatcaagctgatccagaagatgatgaaagtgacgattctatggt |
217 |
Q |
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| T |
45887810 |
tagaagatgataatgatggagatattgataacatcatggatgatgaaggaactactcatcaagctgatccagaagatgatgaaagtgatgattctatggt |
45887711 |
T |
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| Q |
218 |
ctctg |
222 |
Q |
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|||| |
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| T |
45887710 |
ttctg |
45887706 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 24309504 - 24309554
Alignment:
| Q |
59 |
aagtgaagaggaatgtgaaagcagtgaatctggatggaccatgtatattgg |
109 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
24309504 |
aagtgaagaggaatgtcatagtagtgaatctggatggaccatgtatattgg |
24309554 |
T |
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