View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5990_low_3 (Length: 267)
Name: NF5990_low_3
Description: NF5990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5990_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 45673302 - 45673061
Alignment:
| Q |
9 |
acatcatcaatttattatatctataatatcattatatttctttctttctctcaaggtgtatatacaccaaacatttttcctatttttacaacgaccgaag |
108 |
Q |
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| T |
45673302 |
acatcatcaatttattatatctataatatcattatatttctttctttctctcaaggtgtatatacatcaaacatttttcctatttttacaacgatcgaag |
45673203 |
T |
|
| Q |
109 |
tagaaatttattactattttctttatttgcagatcgagtacacattcacttagccaacctcattggatgacatagtttttatttgattgttacttttttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45673202 |
tagaaatttattactattttctttatttgcagatcgagtacacattcacttagccaacctcattgggtgacatagtttttatttgattgttacttttttc |
45673103 |
T |
|
| Q |
209 |
ataccagattatgtgatatcgtttgatcatgtatattatttc |
250 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
45673102 |
gtaccagattatgtgatatagtttgatcatgtatattatttc |
45673061 |
T |
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