View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5991_high_10 (Length: 327)
Name: NF5991_high_10
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 3229354 - 3229644
Alignment:
| Q |
17 |
aagattgtatgtgttatgtttataggtaaaaaatttaggctctcctcggaatccaacattttttaaatgtccttttcctctacaagcaattgtaatttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3229354 |
aagattgtatgtgttatgtttataggtaaaaaatttaggctctcctcggaatccaacattttttaaatgtccttttcctctacaagcaattgta------ |
3229447 |
T |
|
| Q |
117 |
aaataaaatttcagatattggactgaaaagggcatcttttccggaagaaattcaaatgttcaagatattgatgacacatcaatggctttcagattactaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3229448 |
---taaaatttcagatattggactgaaaagggcatcttttccggaagaaattcaaatgttcaagatattgatgacacatcaatggctttcagattactaa |
3229544 |
T |
|
| Q |
217 |
gattacatggccaccatgtctcagccagtgagtattttattagttgatcacac---aatataatacatttatgcaatggtaatggattttaatttcatat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3229545 |
gattacatggccaccatgtctcagccagtgagtattttattagttgatcacccattaatataatatatttatgcaatggtaatggattttaatttcatat |
3229644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 122 - 278
Target Start/End: Complemental strand, 3182075 - 3181919
Alignment:
| Q |
122 |
aaatttcagatattggactgaaaagggcatcttttccggaagaaattcaaatgttcaagatattgatgacacatcaatggctttcagattactaagatta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
3182075 |
aaatttcagatattggactgaaaagggcatttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattg |
3181976 |
T |
|
| Q |
222 |
catggccaccatgtctcagccagtgagtattttattagttgatcacacaatataata |
278 |
Q |
| |
|
|||||| |||| || ||||| |||||||||| | |||||| |||| ||||||||| |
|
|
| T |
3181975 |
catggctaccaagtttcagctggtgagtatttcctaagttgagcacataatataata |
3181919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University