View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_high_11 (Length: 325)
Name: NF5991_high_11
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 31537384 - 31537699
Alignment:
| Q |
1 |
gtattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatc |
100 |
Q |
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| T |
31537384 |
gtattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatc |
31537483 |
T |
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| Q |
101 |
taagtgaacttaccttacaattatatgcactaatacaacttgtaatgttagaaattaacaattaattatttt-nnnnnnntgtcagaaacactgatggaa |
199 |
Q |
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| T |
31537484 |
taattgaagttaccttcaaattatatgcactaatacaacttgtaatgttagaaattgacaactaattattttaaataaaatgtgaaaaacattgatggaa |
31537583 |
T |
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| Q |
200 |
acgtctaagcaactttaaaacatggttagacatctttctgttttgaagtgttcttcactaaaaaacagttgcaacaaggtaattaaataatgccataagt |
299 |
Q |
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| T |
31537584 |
acgtctaagcaactttaaaacatggttagacatctttctgttttgaagtgttcttcactaaaaaacagttgcaacaaggtaattaaataatgccataagt |
31537683 |
T |
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| Q |
300 |
tattgaatattgatga |
315 |
Q |
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| T |
31537684 |
tattgaatattgatga |
31537699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31532102 - 31532216
Alignment:
| Q |
1 |
gtattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31532102 |
gtattcaaatgttatgtgctccttttgcagttgagcacaagtttgttggaattttatatgcacaatacagcttgccatgcaacttgtccatttgtatatt |
31532201 |
T |
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| Q |
101 |
taagtgaacttacct |
115 |
Q |
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|||||||| |||||| |
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| T |
31532202 |
taagtgaagttacct |
31532216 |
T |
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