View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_high_14 (Length: 271)
Name: NF5991_high_14
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 3569834 - 3570076
Alignment:
| Q |
20 |
tggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569834 |
tggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
3569933 |
T |
|
| Q |
120 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569934 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctg |
3570033 |
T |
|
| Q |
220 |
accaccttgctgatccagttaacaacaatgcttgggcctatgc |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3570034 |
accaccttgctgatccagttaacaacaatgcttgggcctatgc |
3570076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 3564186 - 3564425
Alignment:
| Q |
20 |
tggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
119 |
Q |
| |
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|||||||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3564186 |
tggtggacctctcggtgaggtggttgacccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
3564285 |
T |
|
| Q |
120 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||| | |
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| T |
3564286 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggatttttcgttcaagccattgtgactggaaagggacctatcgagaacctcgccg |
3564385 |
T |
|
| Q |
220 |
accaccttgctgatccagttaacaacaatgcttgggccta |
259 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||| |
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| T |
3564386 |
accaccttgctgacccggttaacaacaatgcttgggccta |
3564425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 3572882 - 3573123
Alignment:
| Q |
21 |
ggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaagg |
120 |
Q |
| |
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||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||| || ||||| || || || || ||||||||||||||||| |||| |
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| T |
3572882 |
ggtggacctctcggtgaggttgtcgacccactctacccaggtggtagttttgacccattaggcctagctgatgacccagaggcttttgcagagttaaagg |
3572981 |
T |
|
| Q |
121 |
tgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctga |
220 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || ||||| |
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| T |
3572982 |
tgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctga |
3573081 |
T |
|
| Q |
221 |
ccaccttgctgatccagttaacaacaatgcttgggcctatgc |
262 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
3573082 |
ccaccttgctgacccagttaacaacaatgcatgggcctatgc |
3573123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 3576166 - 3576403
Alignment:
| Q |
21 |
ggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaagg |
120 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||| || || || || ||||||||||||||||| |||| |
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| T |
3576166 |
ggtggacctcttggtgaggtagtcgacccactctacccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaagg |
3576265 |
T |
|
| Q |
121 |
tgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctga |
220 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| || || |
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|
| T |
3576266 |
tgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaaccggaaagggacctctagagaaccttgccga |
3576365 |
T |
|
| Q |
221 |
ccaccttgctgatccagttaacaacaatgcttgggcct |
258 |
Q |
| |
|
||| | |||| || || |||||||| |||||||||| |
|
|
| T |
3576366 |
ccatatcactgaccccgtcaacaacaacgcttgggcct |
3576403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 3585052 - 3584815
Alignment:
| Q |
21 |
ggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaagg |
120 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||| |||| |
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|
| T |
3585052 |
ggtggacctcttggtgaggtagtcgacccactctatccaggtggaagctttgacccattgggccttgctgaggaccccgaggcttttgcagagttaaagg |
3584953 |
T |
|
| Q |
121 |
tgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctga |
220 |
Q |
| |
|
| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| | | ||||| ||||| |
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| T |
3584952 |
ttaaagaactcaagaatggtaggttagcgatgttctctatgtttggattctttgttcaagccatcgtgaccggaaagggacctttaaaaaaccttgctga |
3584853 |
T |
|
| Q |
221 |
ccaccttgctgatccagttaacaacaatgcttgggcct |
258 |
Q |
| |
|
|||| | ||||| |||||||||||||| |||||||||| |
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| T |
3584852 |
ccacatcgctgacccagttaacaacaacgcttgggcct |
3584815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 3578024 - 3578259
Alignment:
| Q |
23 |
tggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtg |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| || || || || ||||||||||||||||| ||||| |
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|
| T |
3578024 |
tggacctcttggtgaggtagtcgatccactctaccccggtggaagctttgacccattgggcctcgcagacgacccagaggcttttgcagagttaaaggtt |
3578123 |
T |
|
| Q |
123 |
aaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctgacc |
222 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||| | |||||||| ||||||| |
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|
| T |
3578124 |
aaagaactcaagaatggcaggttagctatgttctcgatgtttggatttttcgttcaggccattgtaaccgaaaagggaccactagagaaccttgctgacc |
3578223 |
T |
|
| Q |
223 |
accttgctgatccagttaacaacaatgcttgggcct |
258 |
Q |
| |
|
|| | ||||||||||| |||| ||| |||||||||| |
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|
| T |
3578224 |
acatcgctgatccagtcaacagcaacgcttgggcct |
3578259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 13276112 - 13276357
Alignment:
| Q |
20 |
tggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
119 |
Q |
| |
|
|||||||||||| || ||||| | || ||||||||||||||||| ||||| ||||| ||||| || ||||| || || || ||||||| ||||||||| |
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|
| T |
13276112 |
tggtggacctcttggtgaggtgattgacccactctacccaggtggtagcttcgacccattgggtctcgccgatgacccagaagcttttgtagagttgaaa |
13276211 |
T |
|
| Q |
120 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctg |
219 |
Q |
| |
|
|||||||| | || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | || ||||| |||| |
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|
| T |
13276212 |
gtgaaagagattaagaatggtaggttagccatgttttctatgtttggattcttcgttcaagccattgtgaccggaaagggacctttggaaaaccttgctg |
13276311 |
T |
|
| Q |
220 |
accaccttgctgatccagttaacaacaatgcttgggcctatgctac |
265 |
Q |
| |
|
||||||| || || || || |||||||| |||||||||| |||||| |
|
|
| T |
13276312 |
accacctcgcagacccggtcaacaacaacgcttgggcctttgctac |
13276357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 38357201 - 38357443
Alignment:
| Q |
20 |
tggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaag |
119 |
Q |
| |
|
|||||| ||||| || ||||| || || ||||| |||||||| |||||||||||||| |||||||| || || || || |||||||| |||||||||||| |
|
|
| T |
38357201 |
tggtggtcctcttggtgaggttgttgacccactatacccaggaggcagctttgacccattgggcctagctgacgacccagaggctttcgcagagttgaag |
38357300 |
T |
|
| Q |
120 |
gtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctg |
219 |
Q |
| |
|
|| || ||||| || || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| | |||||||| || | |
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|
| T |
38357301 |
gttaaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaaccttgccg |
38357400 |
T |
|
| Q |
220 |
accaccttgctgatccagttaacaacaatgcttgggcctatgc |
262 |
Q |
| |
|
| || ||||| || ||||| |||||||| || ||||||||||| |
|
|
| T |
38357401 |
atcatcttgccgacccagtcaacaacaacgcatgggcctatgc |
38357443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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