View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_high_17 (Length: 255)
Name: NF5991_high_17
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 12609927 - 12610157
Alignment:
| Q |
1 |
cttcgttcctttctaaggggataatacaatgcatatatagattgatgcataaatatgataagataaaaacatccaccacacaatagtgatactatcaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
12609927 |
cttcgttcctttctaaggggataatacaatgcatatatagattgatgcataaacatcgtaagataaatacatcaaccacacaatagtgatactatcaaac |
12610026 |
T |
|
| Q |
101 |
aaactaatagaacatgtttaaaagatctctttctagaataaactaatagaatatgtttaaaatatttccttctgggataaactagtatgatctgtttttc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
12610027 |
aaactaatagaacatgtttaaaagatctctttc-------------tagaatatgtttaaaacattcccttctgggataaactagtatgatctgtttttc |
12610113 |
T |
|
| Q |
201 |
cacgtttctctactgtacttgattgtatcatcaaatattcttgg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12610114 |
cacgtttctctactgtacttgattgtatcatcaaatatttttgg |
12610157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 16884414 - 16884554
Alignment:
| Q |
9 |
ctttctaaggggataatacaatgcatatatagattgatgcataaatatgataagataaaaacatccaccacacaatagtgatactatcaaacaaac---- |
104 |
Q |
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|||| ||| ||||||||||||||| |||| || |||||||||| | ||||||||||||| ||||| ||||||||||| | |||| | ||||||||| |
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| T |
16884414 |
ctttttaatgggataatacaatgcttataaaggttgatgcatatacatgataagataaatacatcaaccacacaataataataccaccaaacaaactaat |
16884513 |
T |
|
| Q |
105 |
taatagaacatgtttaaaagatctctttctagaataaacta |
145 |
Q |
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| T |
16884514 |
taatagaatatgcttaaaagatttccttctagaataaacta |
16884554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3236306 - 3236180
Alignment:
| Q |
1 |
cttcgttcctttctaaggggataatacaatgcatatatagattgatgcataaatatgataagataaaaacatccaccacacaatagtgatactatcaaac |
100 |
Q |
| |
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| T |
3236306 |
cttcgttcatttctaatgagataatacaatacatatataggttaatgcatacacatagtaagataagtacatcaactacacaataacaatactatcaaac |
3236207 |
T |
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| Q |
101 |
aaactaatagaacatgtttaaaagatc |
127 |
Q |
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||| |||||||| ||| |||||||||| |
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| T |
3236206 |
aaattaatagaatatgcttaaaagatc |
3236180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43967059 - 43966916
Alignment:
| Q |
1 |
cttcgttcctttctaaggggataatacaatgcatatatagattgatgcataaatatgataagataaaaacatccaccacacaatagtgatactatcaaac |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||| | ||||||| | ||||||| ||||| ||||| ||| | |||| |||||| ||||| |
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| T |
43967059 |
cttcgttcctttctaaagggacaatacaatgcttatataggtcaatgcatacacatgataacataaatacatcagccatataataacaatacta-caaac |
43966961 |
T |
|
| Q |
101 |
aaactaatagaacatgtttaaaagatctctttctagaataaacta |
145 |
Q |
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||||||||| || ||| |||||||||| | ||||| ||||||||| |
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| T |
43966960 |
aaactaatataatatgcttaaaagatccccttctaaaataaacta |
43966916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 40987584 - 40987498
Alignment:
| Q |
59 |
taagataaaaacatccaccacacaatagtgatactatcaaacaaactaatagaacatgtttaaaagatctctttctagaataaacta |
145 |
Q |
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|||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
40987584 |
taagataagtacatcaaccacacaataacaatactatcaaacaaactaatagaatatgcttaaaagatccacttctagaataaacta |
40987498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 27935270 - 27935212
Alignment:
| Q |
89 |
atactatcaaacaaactaatagaacatgtttaaaagatctct-ttctagaataaactaa |
146 |
Q |
| |
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|||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||| |
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| T |
27935270 |
atactaccaaacaaattaatataatatgtttaaaagatcactcttctagaataaactaa |
27935212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 23396374 - 23396253
Alignment:
| Q |
24 |
atacaatgcatatatagattgatgcataaatatgataagataaaaacatccaccacacaatagtgatactatcaaacaaactaatagaacatgtttaaaa |
123 |
Q |
| |
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|||||||||||||||| |||||||| | | ||||||||||| ||||| || |||||||| || || |||||||| || ||||| ||| |||||| |
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| T |
23396374 |
atacaatgcatatataagttgatgcaaacacatgataagatagctacatcaactacacaataacaatgataccaaacaaattagtagaatatgcttaaaa |
23396275 |
T |
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| Q |
124 |
gatctctttctagaataaacta |
145 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
23396274 |
gatcctcttctagaataaacta |
23396253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 52115655 - 52115703
Alignment:
| Q |
89 |
atactatcaaacaaactaatagaacatgtttaaaagatctctttctaga |
137 |
Q |
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|||||||||||||||||||||||| || |||||||||||| ||||||| |
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| T |
52115655 |
atactatcaaacaaactaatagaatgtggttaaaagatctccttctaga |
52115703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 1518424 - 1518479
Alignment:
| Q |
89 |
atactatcaaacaaactaatagaacatgtttaaaagatctctttctagaataaacta |
145 |
Q |
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|||||| ||||||||||||||||| ||| ||| | || ||||||||||||||||||| |
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| T |
1518424 |
atactaccaaacaaactaatagaatatgcttatagga-ctctttctagaataaacta |
1518479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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