View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_high_21 (Length: 229)
Name: NF5991_high_21
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5604130 - 5603915
Alignment:
| Q |
1 |
gtccccacccttgtacagttattaattcttccttctacttaaaggtgccaagaaatattagatatataacaataggatttgtgaacaagtaaaatagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5604130 |
gtccccacccttgtacagttattaattcttccttctacttaaaggtgccaagaaatattagatatataacaataggttttgtgaacaagtaaaatagttt |
5604031 |
T |
|
| Q |
101 |
agcgtgnnnnnnnacgattgaatcaataaatatctatttaatttaataatgagtttattgatcccatgataaaagctaactgatgtgtgatgcaaaactt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604030 |
agcgtgtttttttacgattgaatcaataaatatctatttaatttaataatgagtttattgatcccatgataaaagctaactgatgtgtgatgcaaaactt |
5603931 |
T |
|
| Q |
201 |
attttatctgtgctcc |
216 |
Q |
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| |||||||||||||| |
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| T |
5603930 |
actttatctgtgctcc |
5603915 |
T |
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