View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_high_7 (Length: 377)
Name: NF5991_high_7
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 9371985 - 9371787
Alignment:
| Q |
96 |
gctccgatttctccaaatcgtatcacgattttttacgaacct---atcatcaattttaagacaattctcaacatgacctcaacaagaaagtctacgaatt |
192 |
Q |
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| T |
9371985 |
gctctgatttctccaaatcgtgtcacgattttttacgaacctttaatcatcaattttaagacaattttcaacatgacctcaacaagaaaatctacgaatt |
9371886 |
T |
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| Q |
193 |
tacagggtaaaataagctttctgtgaaaacttgtttataatagcattagatgggagaatattctcgtacatgatattttatgttcatttttttcctatc |
291 |
Q |
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| T |
9371885 |
tacagggtaaaataagctttgtgtgaaaacttgtttataatagcattagatgggagaatattctcgtacatcatattttatgttcaattttttcctatc |
9371787 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 43208299 - 43208351
Alignment:
| Q |
64 |
aatcaaaactccaaattatgaactaaaatcgtgctccgatttctccaaatcgt |
116 |
Q |
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| T |
43208299 |
aatcaaaactccaaattttgaaccaaaatcgtgccccgatttctccacatcgt |
43208351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 29796774 - 29796853
Alignment:
| Q |
87 |
taaaatcgtgctccgatttctccaaatcgtatcacgattttttacgaacct---atcatcaattttaagacaattctcaa |
163 |
Q |
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| T |
29796774 |
taaaatcgtgccccgatttctcaaaatcatgtcacgatttttgccgaatcttcaatcatcaattttgagacaattctcaa |
29796853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 7597299 - 7597193
Alignment:
| Q |
63 |
gaatcaaaactccaaattatgaactaaaatcgtgctccgatttctccaaatcgtatcacgattttttacgaacct---atcatcaattttaagacaattc |
159 |
Q |
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||||||||| |||||||| ||||| ||||| ||| | |||||||||||||||| || ||||||| |||||| |||||||||||| |||||| || |
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| T |
7597299 |
gaatcaaaaatccaaattttgaaccaaaattgtgtcacaatttctccaaatcgtaacatgatttttgttgaaccttcaatcatcaattttgagacaaatc |
7597200 |
T |
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| Q |
160 |
tcaacat |
166 |
Q |
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||||||| |
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| T |
7597199 |
tcaacat |
7597193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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