View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_1 (Length: 595)
Name: NF5991_low_1
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 37158952 - 37158374
Alignment:
| Q |
1 |
taatgttgttataggtttggaccgaaagagaaggtgttaggaatcttctgaatatggtgggaaagcaggtaaggatggagggttttatgctagaatcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37158952 |
taatgttgttataggtttggaccgaaagagaaggtgttaggaatcttctgaatatggtgggaaagcaggtgaggatggagggttttatgctagaatcata |
37158853 |
T |
|
| Q |
101 |
ttggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggttaagtcaaagaataaaataaatattggaattgagggattt |
200 |
Q |
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| T |
37158852 |
ctggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggttaagtcaaagaataaaataaatatcggaattgagggattt |
37158753 |
T |
|
| Q |
201 |
ctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagttaaggcatagtgtccaaatactatatatgcttgatcataat |
300 |
Q |
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| T |
37158752 |
ctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagttaaggcatagtgtccaaatactatatatgcttgatcataat |
37158653 |
T |
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| Q |
301 |
catgtattatttgcgcagagtgtatgttttaaccatatatttttcatcttttggtcttctgtttcaaacttttctggatatgt-aaagatattcatgtga |
399 |
Q |
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| T |
37158652 |
catgtattatttgcgcagagtgtatgttttaaccatatatttttcatcttttggtcttctgtttcaaacttttctggatatgtaaaagatattcatgtga |
37158553 |
T |
|
| Q |
400 |
atgtaataatatttaagattattttgcagggacggacacattaattttaaataatgacgacacaaaatagttgctaacttaaaaaacttgttgcgtaatc |
499 |
Q |
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| T |
37158552 |
atgtaataatatttaagattattttgcagggacggacacattaattttaaataatgatgacacaaaatagttgctaacttaaaaaacttgttgcctaatc |
37158453 |
T |
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| Q |
500 |
ttttggtta--tcnnnnnnnnaatctgtgacagtctaaggtgctagtgttaccaattttgtctataactacgtcccaac |
576 |
Q |
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| T |
37158452 |
ttttggttatgttttttttttaatgtgtgacagtctaaggtgctagtgttactaattttgtctttaactacgtcccaac |
37158374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 37152760 - 37152462
Alignment:
| Q |
1 |
taatgttgttataggtttggaccgaaagagaaggtgttaggaatcttctgaatatggtgggaaagcaggtaaggatggagggttttatgctagaatcata |
100 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |
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| T |
37152760 |
taatgttggtataggtttggacagaaagagaaggcattaggaatcttctgaatatggtgggaaaggaagtaaggatggagggttttatgctagattcata |
37152661 |
T |
|
| Q |
101 |
ttggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggttaagtcaaagaataaaataaatattggaattgagggattt |
200 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||| | ||| |
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| T |
37152660 |
ttgggatcgttttggagattttgccaaagatatggaaatatacttacaagaaggcaagattaagtcaaagaataaaataaatatcggaattgattgcttt |
37152561 |
T |
|
| Q |
201 |
ctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagttaaggcatagtgtccaaatac--tatatatgcttgatcat |
297 |
Q |
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| T |
37152560 |
ttggagagcttgaattccttattctctagctccaacattggaaaagttgttgttcaagttaaggcctagtgtccaaatactgtatatatgcttgatcat |
37152462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 37146726 - 37146427
Alignment:
| Q |
1 |
taatgttgttataggtttggaccgaaagagaaggtgttaggaatcttctgaatatggtgggaaagcaggtaaggatggagggttttatgctagaatcata |
100 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||| ||||||||||| |||||| | ||||||| |
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| T |
37146726 |
taatgttggtataggtttggaccgaaagagaaggcattagaaatcttctgaacatggtgggaaaggaggtgaggatggagggctttatgattaaatcata |
37146627 |
T |
|
| Q |
101 |
ttggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggttaagtcaaagaataaaataaatattggaattgagggattt |
200 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||| |||||| ||||| ||||||||| ||| |
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| T |
37146626 |
tttgcatcgttttggagattttgttaaagatatggaaaaatacttacaagaaggcaaaattaagccaaagagtaaaatcaatatcggaattgagaacttt |
37146527 |
T |
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| Q |
201 |
ctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagttaaggcatagtgtccaaatactatatatgcttgatcataat |
300 |
Q |
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|||| ||||| |||||| | ||||||| || |||||||||||||||||||||||||||||||| |||| |||||||| |||| ||| |||| ||||| |
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| T |
37146526 |
ttggaaagcttaaactctgttttctctaattctaacattggaaaagttgttgttcaagttaaggcttagtacccaaataccatatttgcatgataataat |
37146427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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