View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_13 (Length: 275)
Name: NF5991_low_13
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 40793136 - 40793352
Alignment:
| Q |
48 |
tctagaacaccacactcaatcccatgctttttcttcctactactttttactaccaccaactcttatattccccttcatcnnnnnnnatcattcaaagttt |
147 |
Q |
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| T |
40793136 |
tctagaacaccacactcaatcccatgctttttcttcctactactttttactaccaccaactcttatattccccttcatctttttttatcattcaaagttt |
40793235 |
T |
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| Q |
148 |
ctttcactacnnnnnnncactctctaatcatgaccatgaacaaagttgataaatctcaagtaatagttctctctttcctagcttttctccttgtgatcac |
247 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40793236 |
ctttcactactttttttcactctctaatcatgaccatgaacaaagttgataaatctcaagtaatagttctctctttcctagcttttctccttgtgatcac |
40793335 |
T |
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| Q |
248 |
acccttcttaccttctt |
264 |
Q |
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||||||||||||||||| |
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| T |
40793336 |
acccttcttaccttctt |
40793352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 40785510 - 40785600
Alignment:
| Q |
177 |
atgaccatgaacaaagttgataaatctcaagtaatagttctctctttcctagcttttctccttgtgatcacacccttcttaccttcttctc |
267 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||| || || | |||||||||||||||||||||| |||||||| |||| |
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| T |
40785510 |
atgaccatgaacaaagttaataaatctcaagttatagttctctctatcttacttcttctccttgtgatcacacccttgttaccttcctctc |
40785600 |
T |
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