View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_15 (Length: 269)
Name: NF5991_low_15
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 29173529 - 29173759
Alignment:
| Q |
20 |
caaacactacactaaaatcgctcacaaataatgaaagatcgaagtttgtacctaagacaacacaaaagattttaaacctaacaatcaatgccagtattat |
119 |
Q |
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| T |
29173529 |
caaacactacattaaaatcgttcacaaataatgaaagatcgaagttta-acctaagataacacaaaagattttaaacctaacaatcaataccagtattat |
29173627 |
T |
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| Q |
120 |
cggttgtgttagcct-atatattgccctcttcatttctattcataaaaataaaagtttacagtgaagaatattgagaatttaaatgtctaaaacatacct |
218 |
Q |
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||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29173628 |
cggttgtgttagctttacagattgccctcttcatttctattcataaaaataaaagtttacagtgaagaatattgagaatttaaatgtctaaaacattcct |
29173727 |
T |
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| Q |
219 |
tnnnnnnnntaatgtgtaaaacatctacatcc |
250 |
Q |
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| T |
29173728 |
taaaaaaaataatgtgtaaaacatctacatcc |
29173759 |
T |
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