View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_16 (Length: 258)
Name: NF5991_low_16
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_16 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 12970 - 13196
Alignment:
| Q |
20 |
ttttgttcttatttccttccnnnnnnnnccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttag |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12970 |
ttttgttcttatttccttccttttttttccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttag |
13069 |
T |
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| Q |
120 |
taaatcattttcccacatatcttcttcagctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaa |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070 |
taaatcattttcccacatatcttcttcaactccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaa |
13169 |
T |
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| Q |
220 |
atggtcatttatctcctctattatatt |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13170 |
atggtcatttatctcctctattatatt |
13196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 12603970 - 12603744
Alignment:
| Q |
20 |
ttttgttcttatttccttccnnnnnnnnccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttag |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603970 |
ttttgttcttatttccttcctttttttcccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttag |
12603871 |
T |
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| Q |
120 |
taaatcattttcccacatatcttcttcagctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaa |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603870 |
taaatcattttcccacatatcttcttcaactccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaa |
12603771 |
T |
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| Q |
220 |
atggtcatttatctcctctattatatt |
246 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
12603770 |
atggtcacttatctcctctattatatt |
12603744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 246
Target Start/End: Original strand, 23261698 - 23261892
Alignment:
| Q |
55 |
tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac |
154 |
Q |
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|||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
23261698 |
tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttataagtaaataattttcccacatatcttcttcagctccac |
23261797 |
T |
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| Q |
155 |
gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
246 |
Q |
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|| |||||||||||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
23261798 |
gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaaaacggtcatttatctcctctattttatt |
23261892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 10453162 - 10453360
Alignment:
| Q |
48 |
ccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttca |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453162 |
ccctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctcagttgattttcttcattttcttagtaaatcattttcccacatatcttcttca |
10453261 |
T |
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| Q |
148 |
gctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
246 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453262 |
gctccacgcctctcatttgcttctgtcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
10453360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 56478249 - 56478055
Alignment:
| Q |
55 |
tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac |
154 |
Q |
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|||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
56478249 |
tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttttaagtaaattattttcccacatatcttcttcagctccac |
56478150 |
T |
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| Q |
155 |
gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
246 |
Q |
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|| |||||||||||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||| | |||||||||||||||||||| |||| |
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| T |
56478149 |
gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaatacggtcatttatctcctctattttatt |
56478055 |
T |
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