View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_2 (Length: 593)
Name: NF5991_low_2
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 24538957 - 24539433
Alignment:
| Q |
18 |
aaaaagttattcaaagcctataaaatttactttcaagaagactataaaaagaagaatcttcaaatacctaaactatctgctaagatgagatacagaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24538957 |
aaaaagttattcaaagcctataaaatttactttcaagaagactataaaaagaagaatcttcaaatacctaaactatctgctaagatgagatacagaaaat |
24539056 |
T |
|
| Q |
118 |
aaccaagtcgcataatttcattctatatgcataataacgttttacaaataatattcatatgatcatcacttactataataatgtgaatcagttaagttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
24539057 |
aaccaagtcgcataatttcattctatatgcataataacgttttacaaataatattcatatgatcatcacttactataataatttgaatcaattaagttat |
24539156 |
T |
|
| Q |
218 |
cttaatcaccaagacaaagcaagttgagat----------aaactatacagcgaattgaaaatgttgctatgccaacataaagaattgttagcaataata |
307 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24539157 |
cttaatcaccaagacaaagcaagttgagataaagaatctcaaactatacaatgaattgaaaatgttgctatgccaacataaagaattgttagcaataata |
24539256 |
T |
|
| Q |
308 |
gctagtgtaaaaagaataaaatcactaagttgcataagtggcacaaaatctcgaagcttttccaacaatatcagtaagcatgtaaagatcatcactttct |
407 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24539257 |
gctagagtaaaaagaataaaatcactaagttgcataagtggcacaaaatctcgaagcttttccaacaatatcagtaagcatgtaaagatcatcactttct |
24539356 |
T |
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| Q |
408 |
caaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaatcaaacatagttacttcaccggcca |
484 |
Q |
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| T |
24539357 |
caaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaatcaaacatagttacttcaccggcca |
24539433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 26035740 - 26035593
Alignment:
| Q |
18 |
aaaaagttattcaaagcctataaaatttactttcaagaagactataaaaagaagaatcttcaaatacctaaactatctgctaagatgagatacagaaaat |
117 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||| |||||| ||||| ||||||| |||||||||||||||||||||| |||||||| | ||||| |
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| T |
26035740 |
aaaaagttattcaaagcctgtaaaatttactgccaacaagactg-aaaaattagaatctgcaaatacctaaactatctgctataatgagatataaaaaat |
26035642 |
T |
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| Q |
118 |
aaccaagtcgcataatttcattctatatgcataataacgttttacaaat |
166 |
Q |
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|||||||| |||||||||| |||||| |||||| | ||||| ||||| |
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| T |
26035641 |
taccaagtcacataatttcaatctatagacataatgaggttttccaaat |
26035593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 26035219 - 26035162
Alignment:
| Q |
402 |
ctttctcaaccttataaatttagcaaatttcaactattgcaatgatcaaaatcctaaa |
459 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
26035219 |
ctttctcaaccttaataatttagcaaatttcaactcttgcaaagatcaaaatcataaa |
26035162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 474 - 581
Target Start/End: Complemental strand, 21889668 - 21889561
Alignment:
| Q |
474 |
ttcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggt |
573 |
Q |
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|||| |||||||||| |||||| |||| ||||||| ||||||||||||||||| ||| | | ||||||| |||| ||| ||||||||||||| | ||| |
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| T |
21889668 |
ttcatcggccaccttctggcacgattaaattcttaccattacttgctccgagctcctaccttctagttcatctccaacacttaattcgttcctcttgggt |
21889569 |
T |
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| Q |
574 |
cctattca |
581 |
Q |
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|||||||| |
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| T |
21889568 |
cctattca |
21889561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 587
Target Start/End: Complemental strand, 21339725 - 21339615
Alignment:
| Q |
475 |
tcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtc |
574 |
Q |
| |
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|||||||||||||||||| | | ||| |||| ||| |||||||||||| ||||||||| ||| || |||||||||||||| ||||||||||||| |
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| T |
21339725 |
tcaccggccaccttttggagtgagtggatccttactgtcacttgctccgagttcatacttctgagt--atctccatcacataatttgttcctcctaggtt |
21339628 |
T |
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| Q |
575 |
ctattcatctctc |
587 |
Q |
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||||||| ||||| |
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| T |
21339627 |
ctattcagctctc |
21339615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 587
Target Start/End: Complemental strand, 14734304 - 14734191
Alignment:
| Q |
474 |
ttcaccggccaccttttggcacaattagattcttattgttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggt |
573 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| | ||| | || |||| || ||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
14734304 |
ttcaccggccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctccatcacacgcttcgttcctcctaggt |
14734205 |
T |
|
| Q |
574 |
cctattcatctctc |
587 |
Q |
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|||||||| ||||| |
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| T |
14734204 |
cctattcagctctc |
14734191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 587
Target Start/End: Original strand, 21376 - 21451
Alignment:
| Q |
512 |
ttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtcctattcatctctc |
587 |
Q |
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|||||||||| ||| | |||| || ||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |
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| T |
21376 |
ttacttgctctgagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctc |
21451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 587
Target Start/End: Complemental strand, 14818335 - 14818260
Alignment:
| Q |
512 |
ttacttgctccgagctcatacttcccagttcatttccatcacataattcgttcctcctaggtcctattcatctctc |
587 |
Q |
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|||||||||| ||| | |||| || ||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
14818335 |
ttacttgctctgagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctc |
14818260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 587
Target Start/End: Complemental strand, 14284150 - 14284101
Alignment:
| Q |
538 |
agttcatttccatcacataattcgttcctcctaggtcctattcatctctc |
587 |
Q |
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||||||| ||||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
14284150 |
agttcatctccatcacatacttcgttcctcctaggtccgattcagctctc |
14284101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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