View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5991_low_3 (Length: 512)

Name: NF5991_low_3
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5991_low_3
NF5991_low_3
[»] chr2 (18 HSPs)
chr2 (99-423)||(37297457-37297782)
chr2 (305-385)||(5902509-5902589)
chr2 (309-385)||(9595292-9595368)
chr2 (311-366)||(1494425-1494480)
chr2 (309-372)||(33256774-33256837)
chr2 (461-496)||(37297416-37297451)
chr2 (310-366)||(11307347-11307403)
chr2 (11-68)||(37297825-37297882)
chr2 (305-385)||(43456667-43456747)
chr2 (314-369)||(9878658-9878713)
chr2 (309-372)||(11063522-11063585)
chr2 (309-372)||(18884901-18884964)
chr2 (309-372)||(28677632-28677695)
chr2 (309-383)||(41293124-41293199)
chr2 (314-372)||(14299604-14299662)
chr2 (314-384)||(14316106-14316176)
chr2 (309-366)||(35378995-35379052)
chr2 (309-385)||(35993340-35993416)
[»] chr6 (16 HSPs)
chr6 (323-385)||(32976026-32976088)
chr6 (316-385)||(3775088-3775157)
chr6 (314-366)||(2034425-2034477)
chr6 (302-362)||(2735096-2735157)
chr6 (309-366)||(34939778-34939835)
chr6 (314-366)||(2027385-2027437)
chr6 (317-385)||(2732207-2732275)
chr6 (323-383)||(28776623-28776683)
chr6 (323-383)||(28798327-28798387)
chr6 (309-385)||(32386523-32386599)
chr6 (342-385)||(7931686-7931729)
chr6 (309-372)||(9027612-9027675)
chr6 (309-366)||(7148700-7148757)
chr6 (332-385)||(32917254-32917307)
chr6 (309-385)||(3155209-3155285)
chr6 (309-369)||(31624124-31624184)
[»] chr3 (8 HSPs)
chr3 (315-385)||(24624250-24624320)
chr3 (309-383)||(39602172-39602246)
chr3 (309-373)||(1217772-1217836)
chr3 (309-385)||(43115090-43115166)
chr3 (314-368)||(27290878-27290932)
chr3 (309-366)||(51206477-51206534)
chr3 (309-381)||(37273168-37273240)
chr3 (309-385)||(39311639-39311715)
[»] chr1 (9 HSPs)
chr1 (309-385)||(11639376-11639452)
chr1 (309-385)||(29723523-29723599)
chr1 (318-385)||(45327623-45327690)
chr1 (332-369)||(27145978-27146015)
chr1 (309-362)||(28689435-28689488)
chr1 (309-366)||(30815632-30815689)
chr1 (309-365)||(15687066-15687122)
chr1 (329-385)||(16980857-16980913)
chr1 (309-373)||(43338150-43338214)
[»] chr7 (6 HSPs)
chr7 (315-371)||(12834936-12834992)
chr7 (324-364)||(27626104-27626144)
chr7 (309-362)||(28691818-28691871)
chr7 (314-366)||(36598335-36598387)
chr7 (313-369)||(38496482-38496538)
chr7 (342-370)||(44178900-44178928)
[»] chr5 (13 HSPs)
chr5 (309-373)||(41957423-41957487)
chr5 (314-385)||(10907417-10907488)
chr5 (325-385)||(11457148-11457208)
chr5 (309-385)||(11700338-11700414)
chr5 (313-385)||(13264065-13264137)
chr5 (307-362)||(1619121-1619176)
chr5 (309-360)||(4659216-4659267)
chr5 (309-383)||(7985003-7985078)
chr5 (314-372)||(28586739-28586797)
chr5 (309-363)||(32897491-32897545)
chr5 (309-378)||(8177499-8177568)
chr5 (324-385)||(16380531-16380592)
chr5 (311-372)||(38766518-38766579)
[»] chr8 (6 HSPs)
chr8 (309-362)||(13459679-13459732)
chr8 (311-366)||(11569436-11569491)
chr8 (311-372)||(9540969-9541030)
chr8 (309-385)||(8558694-8558770)
chr8 (309-373)||(10062113-10062177)
chr8 (309-385)||(13000384-13000460)
[»] chr4 (7 HSPs)
chr4 (309-368)||(28614785-28614844)
chr4 (309-383)||(6987703-6987777)
chr4 (307-385)||(21043195-21043273)
chr4 (314-372)||(52754638-52754696)
chr4 (335-372)||(25717653-25717690)
chr4 (309-385)||(4798526-4798602)
chr4 (309-385)||(21157802-21157878)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 99 - 423
Target Start/End: Complemental strand, 37297782 - 37297457
Alignment:
Q  99 tgagcagcgagacaagaccagtgcctcgtcgagagagtccatggggaattacaggagagaatcatcctgaacccaaagctcatcgttgcaatgaccgtgt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37297782 tgagcagcgagacaagaccagtgcctcgtcgagagagtccatggggaattacaggagagaatcatcctgaacccaaagctcatcgttgcaatgaccgtgt 37297683  T
Q  199 tgaagatgttattcaggttcaatttcttaatcctcannnnnnnggttaatttctcaaatgctttcttttataattcaacatcttaattaagcgtttataa 298  Q
    ||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37297682 tgaagatgttattcaggttcaatttctcaatcctcatttttttggttaatttctcaaatgctttcttttataattcaacatcttaattaagcgtttataa 37297583  T
Q  299 cataacaacatatgaaaataagccgaaaacagttta-tggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagtctcttaattggg 397  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37297582 cataacaacatatgaaaataagccgaaaacaatttattcgaaaagtcataagctgtttccataagctcttccaaatggtctcacaagtctcttaattggg 37297483  T
Q  398 atcggttatagcatcattttaatcaa 423  Q
    ||||||||||||||||||||||||||    
T  37297482 atcggttatagcatcattttaatcaa 37297457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 5902589 - 5902509
Alignment:
Q  305 aacatatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||| |||| |||| |||||||||||||| | | |||||||||||||| |||||| |||||||||  |||||||||||    
T  5902589 aacatataaaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagt 5902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 9595292 - 9595368
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||||| ||||| |||| ||||| | |||||||| ||||| ||||| |||||| ||||||||| ||||||    
T  9595292 tatgaaaataagctgaaaatagttcatggacatgtcataagatgttttcataaactcttctaaatggtcttacaagt 9595368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 1494480 - 1494425
Alignment:
Q  311 tgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||||||||||  ||||||||||||||| | |||||||||||||| ||||||||||    
T  1494480 tgaaaataagctaaaaacagtttatggacatgtcataagctgttttcataagctct 1494425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 33256774 - 33256837
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    ||||||||||||| || ||||||||||| | | |||||||||||||| |||||||||| |||||    
T  33256774 tatgaaaataagctgagaacagtttatgaacatgtcataagctgttttcataagctctcccaaa 33256837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 496
Target Start/End: Complemental strand, 37297451 - 37297416
Alignment:
Q  461 tcatcatattcaagcttataggcatactttcattca 496  Q
    ||||||||||||||||||||||||||||||||||||    
T  37297451 tcatcatattcaagcttataggcatactttcattca 37297416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 11307347 - 11307403
Alignment:
Q  310 atgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||||||||||| |||||||| | ||||| ||||||||| | |||||||||||||||    
T  11307347 atgaaaataagcagaaaacagctcatggacaagtcataatcggtttccataagctct 11307403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 37297882 - 37297825
Alignment:
Q  11 cagagaagtagagaaagtgtagtgtagnnnnnnnggacgaagcaaacaaaagagagag 68  Q
    |||||||||||||||||||||||| ||       ||||||||||||||||||||||||    
T  37297882 cagagaagtagagaaagtgtagtggagtttttttggacgaagcaaacaaaagagagag 37297825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 43456747 - 43456667
Alignment:
Q  305 aacatatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||||| |||||||| |||||||||||||||| | ||||| || ||||| || |||||||| ||||  |||| ||||||    
T  43456747 aacatatggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagt 43456667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 9878713 - 9878658
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttcc 369  Q
    ||||||| ||||||||  ||||||| | |||||||| |||||||||||||||||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctcttcc 9878658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 11063522 - 11063585
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||||||||||||  ||||||  ||||||| | |||||||  ||||||||||||||||||||||    
T  11063522 tatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaa 11063585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 18884901 - 18884964
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||| |||||| | |||||||| | ||||||| ||||||||||||||| ||||||||| |||||    
T  18884901 tatggaaataatctgaaaacagctaatggaaatgtcataagctgtttctataagctctcccaaa 18884964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 28677695 - 28677632
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||| ||||||||||||||||  ||||| ||| |||||||||||||| |||||| ||| |||||    
T  28677695 tatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagttctcccaaa 28677632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 41293199 - 41293124
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatg-gaaaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    |||||| |||||| |||||||| ||||| |||| ||||||||||||||  ||||| ||| |||||| |||||||||    
T  41293199 tatgaatataagctgaaaacagcttatgcgaaatgtcataagctgtttttataagttctcccaaatagtctcacaa 41293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 14299662 - 14299604
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||||||| ||||||| | |||||| | |||||||| ||||||||||| ||||||||||    
T  14299662 aaataagctgaaaacaatgtatggatatgtcataagttgtttccataaactcttccaaa 14299604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 14316176 - 14316106
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaag 384  Q
    |||||||| |||||||| ||||  | | |||||||| |||||||||||||||| | |||| ||||||||||    
T  14316176 aaataagctgaaaacagcttatacatatgtcataagttgtttccataagctctccaaaatagtctcacaag 14316106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 35379052 - 35378995
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    ||||||||||||| |||||||  ||||| | ||||||| |||||||| ||||||||||    
T  35379052 tatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctct 35378995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 35993416 - 35993340
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||||| ||||||| |||||||| | ||||||| ||||||  || |||||| |||||  || ||||||||    
T  35993416 tatgaaaataagctgaaaacaatttatggacacgtcataaactgtttatatcagctctcccaaacagtatcacaagt 35993340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 32976026 - 32976088
Alignment:
Q  323 gaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||||  |||||||||||    
T  32976026 gaaaacagcttatggaaatgtcataagctgtttctataagctcttccaaacagtctcacaagt 32976088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 3775157 - 3775088
Alignment:
Q  316 ataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||| |||||||||||||| | | ||||||||||||||| |||||||||||| ||| |||||||||||    
T  3775157 ataagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaatagtctcacaagt 3775088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 2034477 - 2034425
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||| ||||    
T  2034477 aaataagctgaaaacagcttatggaaatgtcataagctgtttccataaactct 2034425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 2735096 - 2735157
Alignment:
Q  302 aacaacatatgaaaataagccgaaaacagtttatggaaaa-gtcataagctgtttccataag 362  Q
    |||||| |||||||||||||||||||||| ||||| |||| ||||||||| |||| ||||||    
T  2735096 aacaacttatgaaaataagccgaaaacagcttatgaaaaatgtcataagccgttttcataag 2735157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 34939778 - 34939835
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||| |||||||| ||||||| |||||||| | |||||||||||||||| ||||||||    
T  34939778 tatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctct 34939835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 2027437 - 2027385
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||||||| |||||||| ||||||||| |||||||||||||| ||||| ||||    
T  2027437 aaataagctgaaaacagcttatggaaatgtcataagctgttttcataaactct 2027385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 2732275 - 2732207
Alignment:
Q  317 taagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||| ||||||| |||||||| |  |||| ||||||||||||||||| |||||||  |||||||||||    
T  2732275 taagctgaaaacaatttatggacagatcattagctgtttccataagcttttccaaacagtctcacaagt 2732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 28776623 - 28776683
Alignment:
Q  323 gaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    |||||||| |||| || |||||||||||||||||| ||| |||| |||||| |||||||||    
T  28776623 gaaaacagcttatagacaagtcataagctgtttccttaaactctcccaaatagtctcacaa 28776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 28798327 - 28798387
Alignment:
Q  323 gaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    |||||||| |||| || |||||||||||||||||| ||| |||| |||||| |||||||||    
T  28798327 gaaaacagcttatagacaagtcataagctgtttccttaaactctcccaaatagtctcacaa 28798387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 32386599 - 32386523
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||||| |||||||  || |||| | || ||||| | ||||||||||||||| |||| ||||||||||||    
T  32386599 tatgaaaataagctgaaaacaagttgtggacatgttataagatatttccataagctctttcaaacggtctcacaagt 32386523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 7931729 - 7931686
Alignment:
Q  342 gtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||    
T  7931729 gtcataagttgttttcataagctcttctaaatggtctcacaagt 7931686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 9027612 - 9027675
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    ||||||||||||| |||||||  ||||||| | |||||||| | ||||||||||||||| ||||    
T  9027612 tatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaa 9027675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 7148700 - 7148757
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    ||||||||||||  ||||| || ||||||| |||||||||| ||||||| ||||||||    
T  7148700 tatgaaaataagttgaaaatagcttatggacaagtcataagttgtttccgtaagctct 7148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 32917254 - 32917307
Alignment:
Q  332 ttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||| | |||||||| |||||||||||||||| |||||  |||||||||||    
T  32917254 ttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagt 32917307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 3155209 - 3155285
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| |||||||| |||||||| |||| || | |||||||| ||| |  |||||||||| ||||||||||| |||||    
T  3155209 tatggaaataagctgaaaacagcttatagacatgtcataagttgtgtatataagctctttcaaatggtctctcaagt 3155285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 31624124 - 31624184
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttcc 369  Q
    ||||||||||||  |||||||| ||||| | | |||||||||||||| |||||| ||||||    
T  31624124 tatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttcttcc 31624184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 24624250 - 24624320
Alignment:
Q  315 aataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||  |||| ||||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagt 24624320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 39602246 - 39602172
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    ||||||||||||  ||||||| |||||| | | |||||||||||| | ||||||||||||||||| | |||||||    
T  39602246 tatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaatagcctcacaa 39602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 1217836 - 1217772
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaat 373  Q
    ||||||| ||||  |||||||  ||||||| | |||||||||||||||| |||||||||||||||    
T  1217836 tatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctcttccaaat 1217772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 43115090 - 43115166
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| |||||||| |||||||  ||||||| | |||||||| ||||||||||| ||||||||||   ||||||||||    
T  43115090 tatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagt 43115166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 27290932 - 27290878
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttc 368  Q
    |||||||| |||||||| ||||||  | |||||||||||||| ||||||||||||    
T  27290932 aaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctcttc 27290878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 51206534 - 51206477
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    ||||||||||||| |||||||  || |||| | ||||||||||||||||||| |||||    
T  51206534 tatgaaaataagctgaaaacaacttttggataggtcataagctgtttccatatgctct 51206477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 37273168 - 37273240
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcac 381  Q
    |||| |||||||  |||||||  ||||||| | |||||||| |||||||||||||||| |||||  |||||||    
T  37273168 tatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcac 37273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 39311715 - 39311639
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| |||||||  ||||| | ||| ||||||  |||||| ||||||||||||||||| | |||| |||||||||||    
T  39311715 tatggaaataagatgaaaaaaatttgtggaaatatcataaactgtttccataagctctccaaaatagtctcacaagt 39311639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 11639452 - 11639376
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||||||||||  ||||||| ||||||| | |||||||||||||| |||||||||||| |||| |||||| ||||    
T  11639452 tatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctcttctaaattgtctcaaaagt 11639376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 29723523 - 29723599
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| |||||||  |||||||||||||||| | |||||||||||||||||| || |||| ||||  || ||||||||    
T  29723523 tatgtaaataagttgaaaacagtttatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagt 29723599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 45327623 - 45327690
Alignment:
Q  318 aagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| ||||||| |||||||| | |||||||| |||||||||||||||  |||| | |||||||||||    
T  45327623 aagctgaaaacaatttatggacatgtcataagttgtttccataagctcccccaactagtctcacaagt 45327690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 27145978 - 27146015
Alignment:
Q  332 ttatggaaaagtcataagctgtttccataagctcttcc 369  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  27145978 ttatggacatgtcataagctgtttccataagctcttcc 27146015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 28689488 - 28689435
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataag 362  Q
    ||||||||||||| |||||||  ||||||| | |||||||||||||||| ||||    
T  28689488 tatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaag 28689435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 30815689 - 30815632
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    ||||||||||||| ||||||| |||||| | | ||||||||||||||  |||||||||    
T  30815689 tatgaaaataagctgaaaacattttatgaacatgtcataagctgtttatataagctct 30815632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 15687122 - 15687066
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctc 365  Q
    ||||| ||||||| ||||||| |||||||| | |||||||| || ||||||||||||    
T  15687122 tatgacaataagctgaaaacaatttatggacatgtcataaggtgattccataagctc 15687066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 16980857 - 16980913
Alignment:
Q  329 agtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||||| ||| ||| |||| ||||||||||||||||  ||||| |||||||||||    
T  16980857 agtttatgaaaatgtcgtaagttgtttccataagctctctcaaatagtctcacaagt 16980913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 43338150 - 43338214
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaat 373  Q
    |||||||||| || ||||| || ||||| | | ||||||||||||||||||||| ||||| ||||    
T  43338150 tatgaaaataggctgaaaatagattatgaacatgtcataagctgtttccataagttcttctaaat 43338214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 12834992 - 12834936
Alignment:
Q  315 aataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaa 371  Q
    ||||||| |||||||||||||||| | |||||||||||||||||||| |||| ||||    
T  12834992 aataagctgaaaacagtttatggacatgtcataagctgtttccataatctctaccaa 12834936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 27626144 - 27626104
Alignment:
Q  324 aaaacagtttatggaaaagtcataagctgtttccataagct 364  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  27626144 aaaacagtttatggacatgtcataagctgtttccataagct 27626104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 28691871 - 28691818
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataag 362  Q
    ||||||||||| | || |||| |||||||| |||||||||||||||| ||||||    
T  28691871 tatgaaaataaactgataacaatttatggacaagtcataagctgttttcataag 28691818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 36598387 - 36598335
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    |||||||| |||||||| ||||| | | |||||||| ||||||||||||||||    
T  36598387 aaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctct 36598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 38496538 - 38496482
Alignment:
Q  313 aaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttcc 369  Q
    |||||| ||||||||| |||||| || | || |||||||||||||||||||| ||||    
T  38496538 aaaataggccgaaaactgtttattgacatgttataagctgtttccataagcttttcc 38496482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 44178928 - 44178900
Alignment:
Q  342 gtcataagctgtttccataagctcttcca 370  Q
    |||||||||||||||||||||||||||||    
T  44178928 gtcataagctgtttccataagctcttcca 44178900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 41957487 - 41957423
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaat 373  Q
    ||||||||||||  |||||||  ||||||| | |||||||||||||||| |||||||||||||||    
T  41957487 tatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctcttccaaat 41957423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 10907417 - 10907488
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||||||||| |||| || | | |||||| ||||| ||||||||||||||||  |||||||||||    
T  10907417 aaataagccgaaaacagcttattgacatgacataagttgttttcataagctcttccaaacagtctcacaagt 10907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 11457148 - 11457208
Alignment:
Q  325 aaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||||| ||||||| | |||||||| |||||||||||||||||| |||  |||||||||||    
T  11457148 aaacagcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagt 11457208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 11700414 - 11700338
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||| | |||||||| ||||||| | |||||||| ||||||||||| |||| |  ||| |||||||||||    
T  11700414 tatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtctcacaagt 11700338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 13264137 - 13264065
Alignment:
Q  313 aaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||| |||||||| ||||| | | | |||||||||||||||||| ||||||||||  ||||| |||||    
T  13264137 aaaataagctgaaaacagcttatgaatatggcataagctgtttccataaactcttccaaacagtctcgcaagt 13264065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 1619121 - 1619176
Alignment:
Q  307 catatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataag 362  Q
    ||||||||||| ||| |||||||||||||| ||| | |||||||||||| ||||||    
T  1619121 catatgaaaatcagctgaaaacagtttatgtaaatggcataagctgttttcataag 1619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 4659216 - 4659267
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccata 360  Q
    |||| ||||||||||||||||||||||||||   ||||||||||||| ||||    
T  4659216 tatggaaataagccgaaaacagtttatggaattttcataagctgttttcata 4659267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 7985003 - 7985078
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatgga-aaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    ||||||||||||| |||||||| ||||| | || |||| ||||||||| | |||||||| |||||| |||||||||    
T  7985003 tatgaaaataagctgaaaacagcttatgaacaacgtcacaagctgttttcttaagctctcccaaatagtctcacaa 7985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 28586797 - 28586739
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||||||| |||||||| ||| ||| | |||||||||| |||||||||||||| |||||    
T  28586797 aaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaa 28586739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 32897491 - 32897545
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagc 363  Q
    ||||||||||||| |||||||| ||||| |||  ||||||| |||||||||||||    
T  32897491 tatgaaaataagcagaaaacaggttatgaaaatatcataagttgtttccataagc 32897545  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 8177568 - 8177499
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtct 378  Q
    ||||||||||| | |||||||  ||||||| |  ||||||||||||||||| ||||||||| || |||||    
T  8177568 tatgaaaataacctgaaaacaacttatggacatatcataagctgtttccatgagctcttccgaacggtct 8177499  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 16380592 - 16380531
Alignment:
Q  324 aaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||| ||||||| | ||| |||||||||||||||| ||||| ||||| || ||||||||    
T  16380592 aaaacagcttatggacatgtcgtaagctgtttccataaactcttgcaaatagtttcacaagt 16380531  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 38766579 - 38766518
Alignment:
Q  311 tgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||||||||| ||||||||  |||||||   |||||||| |||||||||||| |||||||||    
T  38766579 tgaaaataagtcgaaaacaacttatggacgtgtcataagttgtttccataagttcttccaaa 38766518  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 13459679 - 13459732
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataag 362  Q
    |||||||||| || |||||||||||||| ||| |||||||||||||| ||||||    
T  13459679 tatgaaaataggctgaaaacagtttatgaaaatgtcataagctgttttcataag 13459732  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 11569491 - 11569436
Alignment:
Q  311 tgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctct 366  Q
    ||||||||||| |||||||  ||||| | | |||||||||||||||||||||||||    
T  11569491 tgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 9541030 - 9540969
Alignment:
Q  311 tgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    ||||||||||| ||| |||  ||||||| | |||||||| |||||||||||||||| |||||    
T  9541030 tgaaaataagctgaacacaaattatggacatgtcataagatgtttccataagctctcccaaa 9540969  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 8558694 - 8558770
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||| | ||||| |||| ||||| | |||| ||| |||||||||||||||| |||||  | |||||||||    
T  8558694 tatgaaaataatctgaaaatagttgatggacatgtcacaagttgtttccataagctctcccaaacagcctcacaagt 8558770  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 10062177 - 10062113
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaat 373  Q
    |||| |||||||| |||||||| |||| |||| |||||||  |||| ||||||||||| ||||||    
T  10062177 tatgcaaataagctgaaaacagcttatagaaatgtcataaaatgttgccataagctctcccaaat 10062113  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 13000460 - 13000384
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| |||||||| |||||||  || |||| | |||||||| |||| |||||| ||||| ||||| |||||||||||    
T  13000460 tatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagt 13000384  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 28614844 - 28614785
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttc 368  Q
    ||||||||||||| ||||| || ||||||| | |||||||  ||||||||||||||||||    
T  28614844 tatgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctcttc 28614785  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 6987777 - 6987703
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaa 383  Q
    |||| |||||||  ||||| |||||||||| | |||||||| ||| |||||||||||| |||||  |||||||||    
T  6987777 tatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaa 6987703  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 21043273 - 21043195
Alignment:
Q  307 catatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    ||||||||||||  | |||||||| ||||| |   |||||||||||||||||||| |||| |||||  |||||||||||    
T  21043273 catatgaaaatacactgaaaacagcttatgaacgtgtcataagctgtttccataacctctcccaaacagtctcacaagt 21043195  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 52754638 - 52754696
Alignment:
Q  314 aaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||||||| |||| ||| ||||||| | ||||||| |||||| ||||||||||||||||    
T  52754638 aaataagctgaaagcagcttatggacacgtcataaactgttttcataagctcttccaaa 52754696  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 25717653 - 25717690
Alignment:
Q  335 tggaaaagtcataagctgtttccataagctcttccaaa 372  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  25717653 tggacaagtcataagttgtttccataagctcttccaaa 25717690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 4798602 - 4798526
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| ||||||||  ||||||| ||||| | | |||| |||| |||||||||||||||||| ||  |||||||||||    
T  4798602 tatgcaaataagctcaaaacagcttatgtacatgtcagaagccgtttccataagctcttcctaacagtctcacaagt 4798526  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 21157802 - 21157878
Alignment:
Q  309 tatgaaaataagccgaaaacagtttatggaaaagtcataagctgtttccataagctcttccaaatggtctcacaagt 385  Q
    |||| ||||||||  ||||||| || || ||| |||||||||||||||  ||||||||||||||  |||| ||||||    
T  21157802 tatggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagt 21157878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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