View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_4 (Length: 416)
Name: NF5991_low_4
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 11301463 - 11301850
Alignment:
| Q |
19 |
ccaagagaagcatatagcccacatgcaaaaatgtttacttcgttaccacactttgggaagaaatgattagcattagcaaccgtcccaactacgattcatg |
118 |
Q |
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| T |
11301463 |
ccaagagaagcatatagcccacatacaaaaatgtttacttcgttaccacactttgggaagaaatgattagcattagcaaccgtcccaactacgattcatg |
11301562 |
T |
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| Q |
119 |
aagttttcacctaataagctatactcgtctttaaaattgcctcttataacaattattcgttatttaatgctttgtgttgtatagcatcaaccagtaagat |
218 |
Q |
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| T |
11301563 |
aagttttcacctaataagctatactcgtctttaaaattgcctcttataacaattattcgttattcaatgctttgtgttgtatagcatcaaccagtaagat |
11301662 |
T |
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| Q |
219 |
caccaaggattgaattttagcatatttttaattgtttaggaccagtcataaactagattttgggttaagatatattgttaaattctttttatgttgttgc |
318 |
Q |
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| T |
11301663 |
caccaaggattgaattttagcatatctttaattgtttaggaccaatcataaactagattttgggttaagatatgttgttaaattctctttatgtggttgc |
11301762 |
T |
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| Q |
319 |
aatggtcaaagacggatctatctattata----gttggggacggttgatcccgcaacttaaatcattttatagctaatcatatgatat |
402 |
Q |
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| T |
11301763 |
aatggtcaaagacggatctgtctattatagttggttggggacaattgatcccgcaacttaaatcattttatagctaatcatatgatat |
11301850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 137 - 402
Target Start/End: Original strand, 11302528 - 11302797
Alignment:
| Q |
137 |
ctatactcgtctttaaaattgcctcttataacaattattcgttatttaatgctttgtgttgtatagcatcaaccagtaagatcaccaaggattgaatttt |
236 |
Q |
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| T |
11302528 |
ctatactcgtctttaaaattgcctcttataacaattattcgttattcaatgctttgtgttgtatagcatcaaccagtaagatcaccaaggattgaatttt |
11302627 |
T |
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| Q |
237 |
agcatatttttaattgtttaggaccagtcataaactagattttgggttaagatatattgttaaattctttttatgttgttgcaatggtcaaagacggatc |
336 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
11302628 |
agcatatctttaattgtttaggaccaatcataaactagattttgggttaagatatgttgttaaattctctttatgtggttgcaatggtcaaagacggatc |
11302727 |
T |
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| Q |
337 |
tatctattata----gttggggacggttgatcccgcaacttaaatcattttatagctaatcatatgatat |
402 |
Q |
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| T |
11302728 |
tgtctattatagttggttggggacaattgatcccgcaacttaaatcattttatagctaatcatatgatat |
11302797 |
T |
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