View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5991_low_5 (Length: 401)
Name: NF5991_low_5
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 39029751 - 39030134
Alignment:
| Q |
16 |
aaaagttttatttctttagaacaatagttttctacgacgtgacgaattaaatcttgaattttaagtaaagtggatgtttatatttatt-gattgtgcctc |
114 |
Q |
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| T |
39029751 |
aaaagttttatttctttagaacaatagttttctacgacgtgacgaattaaatcttgaattttaagtaaagtggatgtttatatttatttgattgtgcctc |
39029850 |
T |
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| Q |
115 |
aaacatgaataactattgtggaaggaacctctaaatggtgctaaatggatgatatgtgtacaaaaataacttctctttaatatatgactaaaaaatagtt |
214 |
Q |
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| T |
39029851 |
aaacatgaatagctattgtggacggaacctctaaatggtgttaaatggatgatatgtgtacaaaaataacttctctttaatatatgactaaaaaatagtt |
39029950 |
T |
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| Q |
215 |
gtctttaa-ttatgtactttattttacggaaataaacttaactcgtttcattcatcaaactatttttattatatggtcaa----aggtaaattattggca |
309 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39029951 |
gtctttaatttgtgtactttattttacggaaataaacttaactcgtttcattcatcaaactatttttaatatatggtcaaatataggtaaattattggca |
39030050 |
T |
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| Q |
310 |
attagcaatagatgactagagcctatactgacatgcgaagcgccctctaactaattcacgagtcatgaccctgtgatattcttc |
393 |
Q |
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| T |
39030051 |
attagcaatagatgactagagcctatactgacatgcgaagcgctctctaactaattcattagtcatgaccctgtgatattcttc |
39030134 |
T |
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