View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5991_low_9 (Length: 363)
Name: NF5991_low_9
Description: NF5991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5991_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 38958599 - 38958245
Alignment:
| Q |
7 |
ctcttctcatctcatctcacttaatatcaatgttaagtagtcttaaaaccttaattgaatttaaaccctactctccaaatcattttccctcgaaacataa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38958599 |
ctcttctcatctcatctcacttaatatcaatgttaagtagtcttaaaaccttaattgaatttaaaccctaatctccaaatcattttccctcgaaacataa |
38958500 |
T |
|
| Q |
107 |
ttgcatagcgctctccatttaaggtaggtcctaatcattatcaagatttgttgcaaagcaaaactcatttggaacttacctattattgtagattctaatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38958499 |
ttgcatagcgctctccatttaaggtaggtcctaatcattatcaagatttcttgcaaagcaaaactcattttgaacttacctattattgtagattctaatc |
38958400 |
T |
|
| Q |
207 |
attatcaatgnnnnnnnnnnnngttgttgcaagaattgtctttttaggctagacaaactctcaccttaaatcttttggaaattataggaatggatgatat |
306 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38958399 |
attatcaatg--ttttttttttgtagttgcaagaattgtctttttaggctagacaaactctcaccttaaatcttttggaaattataggaatggatgatat |
38958302 |
T |
|
| Q |
307 |
tctctaagtcattcaaaaagtgatacaaattcatataatttagaagcacttgagtat |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38958301 |
cctctaagtcattcaaaaaatgatacaaattcatataatttagaagcacttgagtat |
38958245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University