View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_high_12 (Length: 294)
Name: NF5992_high_12
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 47077331 - 47077623
Alignment:
| Q |
1 |
caattgagtaacaaatttactacaaacaaaatcatccatactannnnnnn-ctgtaagacatagacattaatcataggcttatcccgcaatatccgttca |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077331 |
caattcagtaacaaatttactacaaacaaaatcatccatactattttttttctgtaagacatagacattaatcataggcttatcccgcaatatccgttca |
47077430 |
T |
|
| Q |
100 |
cgtggctgagtagtgtttggactcttactaagttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgtacttgttgttgtt |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077431 |
cgtggctgagtagtgtttggactcttactaatttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgtacttgttgttgtt |
47077530 |
T |
|
| Q |
200 |
gatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttctcctatctgtgctgct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
47077531 |
gatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttcccctatctgagctgct |
47077623 |
T |
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