View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_high_15 (Length: 270)
Name: NF5992_high_15
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_high_15 |
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| [»] scaffold0037 (4 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 29361 - 29539
Alignment:
| Q |
1 |
tcgactattaaaggaaatatataccataatattatgtatactaatgtagataaatacactgggaatcttgtgatgttcacaatgtatcctttatgttgtg |
100 |
Q |
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| T |
29361 |
tcgaccattaaaggaaatatataccataatattatgtatactaatgtagataaatacactgggaatcttgtgatgttcacaatgtatcctttatgctgtg |
29460 |
T |
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| Q |
101 |
aaggaaattccaatattcgttcagctagtgatcatcacgtacaacttcatcccacttgcctgtacaaaatatagcatat |
179 |
Q |
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| T |
29461 |
aaggaaattccaatatttgttcagcttgtgatcatcgggtacaacttcatcccacttgcccgtgcaaaatatagcatat |
29539 |
T |
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Target: scaffold0037; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 29989 - 30061
Alignment:
| Q |
185 |
cagttcagtaacataagtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttc |
257 |
Q |
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| T |
29989 |
cagttcagtaacataagtccaagtcccggctaagtattcacgagaaaggcgttgcaaactttctgaccttttc |
30061 |
T |
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Target: scaffold0037; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 106855 - 106775
Alignment:
| Q |
99 |
tgaaggaaattccaatattcgttcagctagtgatcatcacgtacaacttcatcccacttgcctgtacaaaatatagcatat |
179 |
Q |
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| T |
106855 |
tgaaggaaattccaatattcattcagcttataatcgtctggcacaacttcatcccacttgcctgtacaaaatatagcatat |
106775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 105010 - 104938
Alignment:
| Q |
185 |
cagttcagtaacataagtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttc |
257 |
Q |
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| T |
105010 |
cagttcagtaacataggtccaagtctcagttaagtattcacgagaaaagcgttgcaaacttcttgaccttttc |
104938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 10425905 - 10425945
Alignment:
| Q |
139 |
gtacaacttcatcccacttgcctgtacaaaatatagcatat |
179 |
Q |
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| T |
10425905 |
gtacaacttcatcccacttgcctgtacaaaatatagcatat |
10425945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 14200461 - 14200389
Alignment:
| Q |
185 |
cagttcagtaacataagtccaagtcccggctaagtatttgcgagaaaggcgtttcaaactttctgaccttttc |
257 |
Q |
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| T |
14200461 |
cagttcagtaacataggtccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgaccttttc |
14200389 |
T |
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