View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_high_3 (Length: 506)
Name: NF5992_high_3
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_high_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 219 - 506
Target Start/End: Complemental strand, 1665069 - 1664782
Alignment:
| Q |
219 |
gtaaatgatacttaatcttgtgaatcacatgatttttaaattttgatctacaaagttccaaaattgcggtggtccacgatcgataaaaataaccgaagtc |
318 |
Q |
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| T |
1665069 |
gtaaatgatacttaatcttgtgaatcacatgatttttaaattttgatctacaaagttccaaaattgcggtggtccacgatcgataaaaataaccgaagtc |
1664970 |
T |
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| Q |
319 |
tatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaat |
418 |
Q |
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| T |
1664969 |
tatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaat |
1664870 |
T |
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| Q |
419 |
atggacaaataaaatcacaataacaagtacttgacatagttgacaaaactgcaaaatttaactctaaaacatcaattttaattcaaac |
506 |
Q |
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| T |
1664869 |
atggacaaataaaatcacaataacaagtacttgacatagttgagaaaactgcaaaatttaactctaaaacatcaattttaattcaaac |
1664782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 1665201 - 1665090
Alignment:
| Q |
79 |
caatcaggtgtctatcagtaataaacaaaaacacatgaaagttcaaaaaaggcaagaagaataatgatgttcatggacacaactgtcgagtcaagtggtt |
178 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1665201 |
caatcaggtgtctatcagcaataaacaaaaacacatgaaagttcaaaaaaggaaagaagaataatgatgttcatggacacaactgtcaagtcaagtggtt |
1665102 |
T |
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| Q |
179 |
cttgtgaattct |
190 |
Q |
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| T |
1665101 |
cttgtgaattct |
1665090 |
T |
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