View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_high_4 (Length: 452)
Name: NF5992_high_4
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 66 - 391
Target Start/End: Original strand, 47076916 - 47077256
Alignment:
| Q |
66 |
aactaaaaagattcttattcattcaacaaaaattattaataaacaatata--------------gcattcaaatgaaatgatttcatacaaactatacac |
151 |
Q |
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| T |
47076916 |
aactaaaatgattcttattcattcaacaaaaattattaataaacaatatacataatatagcggtgcattcaaatgaaatgatttcatacaaactatacac |
47077015 |
T |
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| Q |
152 |
agagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtagtacgaacgtagatgttaaaaagaagagaaggagaat |
251 |
Q |
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| T |
47077016 |
agagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtagtacgaacgtagatgttaaaaagaagagaaggagaat |
47077115 |
T |
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| Q |
252 |
ctcctatcaaatctaaaacaacaaacggtgatggcaaatgaatattccatttaccccccaatgtaataacaacaatgtcacactagaaaaggtgtattca |
351 |
Q |
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| T |
47077116 |
ctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaatgtaataacaacaatgtcacactagaaaaggtgtattca |
47077215 |
T |
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| Q |
352 |
ccattttctactttctaaggg-acaacaagctaagttacag |
391 |
Q |
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| T |
47077216 |
ccattttctactttctaagggaacaacaagctaagtcacag |
47077256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 47077252 - 47077285
Alignment:
| Q |
404 |
cacagttcacaaaattacaagtggtgaataatat |
437 |
Q |
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| T |
47077252 |
cacagttcacaaaattacaagtggtgaataatat |
47077285 |
T |
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