View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_high_5 (Length: 411)
Name: NF5992_high_5
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 44256105 - 44256487
Alignment:
| Q |
16 |
caatgccaagtcatcataatgctaccacaagcattccttggcacttgagcatgttcttaatgatattttttcagtaactactaaaaattacccctcaaaa |
115 |
Q |
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| T |
44256105 |
caatgccaagtcatcataatgctaccacaagcattccttggcacttgagcatgttcttaatgatatttt-tcagtaactactaaaaatgacccctcaaaa |
44256203 |
T |
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| Q |
116 |
tttaaataatgactcgtacaagagaaaaacaattattcattcacattccattactcaattgcctattatgnnnnnnnnaagagaaatgttatatgaaat- |
214 |
Q |
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| T |
44256204 |
tttaaataatgactcgtacaagagaaaaacaattattcattcacattccattactcaattgcctattatg--ttttttaagagaaatgttatatgaaata |
44256301 |
T |
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| Q |
215 |
nnnnnnnntaagttcaacatccaatttgtatactctttggcttcgatggggatttgtagttcactcaactgaactgtgagattaaatgagttaaaaagtt |
314 |
Q |
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| T |
44256302 |
aaaaaaaataagttcaacatccaatttgtatactctttggcttcgatggggatgtgtagctcactcgactgaactgtaagattaaatgagttaaaaagtt |
44256401 |
T |
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| Q |
315 |
aaaaattcatagttcaaattttgacaaaagataaaataatatttaccattaaagaatactctttagataatatgttctcttttcat |
400 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44256402 |
aaaaattcaaagttcaaattctgacaaaagataaaataatatttaccattaaagaatactctttagataatatgttctcttttcat |
44256487 |
T |
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