View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5992_high_7 (Length: 362)

Name: NF5992_high_7
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5992_high_7
NF5992_high_7
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-320)||(59549-59871)
scaffold0008 (322-362)||(59420-59460)
[»] chr5 (2 HSPs)
chr5 (141-321)||(24018284-24018464)
chr5 (141-320)||(31034906-31035085)
[»] chr8 (3 HSPs)
chr8 (151-313)||(38296939-38297100)
chr8 (203-241)||(19450400-19450438)
chr8 (203-241)||(19530638-19530676)
[»] chr3 (2 HSPs)
chr3 (203-321)||(47476473-47476591)
chr3 (203-239)||(43073759-43073795)
[»] chr7 (1 HSPs)
chr7 (153-231)||(49036498-49036576)
[»] chr1 (1 HSPs)
chr1 (203-240)||(26384473-26384510)


Alignment Details
Target: scaffold0008 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 59871 - 59549
Alignment:
Q  1 aaaccatgacagtagcacaa--gaactgcgcggagcacaccaccaaaagcacaaaaataactgcctgagacaggcctgcacttcaaaactgcagcagcaa 98  Q
    |||||||||||||| |||||  |||| |||||||||||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  59871 aaaccatgacagtaacacaatagaaccgcgcggagcacaccaccataagcacaaaaattaccgcctcagacaggcctgcacttcaaaactgcagcagcaa 59772  T
Q  99 gcaccctgctaattgcaaccaa-ccaaagaccactatctttcgagacaaagtcttggattccaacaccatttgcaaaaatgacaagacggggtgtgagtc 197  Q
    ||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||    
T  59771 gcatcctgctaattccaaccaaaccaaagaccaccatctttcgagacaaagtcttggattccaacaccattcgctaaaaagacaagatggggtgtgagtc 59672  T
Q  198 cattgcaacatccacctccaagacaacaccttaatttcttcaaccaattcatccacctggaaatttatacccttaaaaatcttgtcatttctctttttcc 297  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  59671 cattccaacatccacctccaagacaacaccttaatttcttcgaccaattcatccaccttaaaatttatccccttaaaaatcttgtcatttctctttttcc 59572  T
Q  298 acataacccaaatggttgtgtgc 320  Q
    |||||||||||||||||||||||    
T  59571 acataacccaaatggttgtgtgc 59549  T

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Target: scaffold0008; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 59460 - 59420
Alignment:
Q  322 gaaaccaacaatccaaccacatcatcaattttaaccacacc 362  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  59460 gaaaccaacagtccaaccacatcatcaattttaaccacacc 59420  T

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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 24018464 - 24018284
Alignment:
Q  141 agacaaagtcttggattccaacaccatttgcaaaaatgacaagacggggtgtgagtccattgcaacatccacctccaagacaacaccttaatttcttcaa 240  Q
    |||||||||||||||||||||||||||| | ||||| |||| ||||||   ||||| |  | ||||||||||||||||||| ||||||| || || ||||    
T  24018464 agacaaagtcttggattccaacaccattcgtaaaaaagacaggacgggaaatgagttctatccaacatccacctccaagacgacacctttatctcctcaa 24018365  T
Q  241 ccaattcatccacctggaaatttatacccttaaaaatcttgtcatttctctttttccacataacccaaatggttgtgtgcc 321  Q
    ||||||||||||| |  ||||| || ||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||    
T  24018364 ccaattcatccacatcaaaattaatccccttaaaaatcttgccgtttctcttcttccacatcacccaaatggtagtgtgcc 24018284  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 320
Target Start/End: Original strand, 31034906 - 31035085
Alignment:
Q  141 agacaaagtcttggattccaacaccatttgcaaaaatgacaagacggggtgtgagtccattgcaacatccacctccaagacaacaccttaatttcttcaa 240  Q
    |||||||  ||||||||||||||||||||  ||||| |||||||| | |||||  | | || ||||||| |||||||||||||||||||||| ||| |||    
T  31034906 agacaaaaccttggattccaacaccatttataaaaaagacaagacagcgtgtgcattctttccaacatctacctccaagacaacaccttaatctctacaa 31035005  T
Q  241 ccaattcatccacctggaaatttatacccttaaaaatcttgtcatttctctttttccacataacccaaatggttgtgtgc 320  Q
    ||||||| |||||||  || ||||| ||||| |||||| ||||||||||| ||||||||| ||||||||| |||||||||    
T  31035006 ccaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttccacaaaacccaaatagttgtgtgc 31035085  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 313
Target Start/End: Original strand, 38296939 - 38297100
Alignment:
Q  151 ttggattccaacaccatttgcaaaaatgacaagacggggtgtgagtccattgcaacatccacctccaagacaacaccttaatttcttcaaccaattcatc 250  Q
    |||||||||||| ||||| | ||||| ||||||||||||| |||||||  | || |||||||||||||||||||||||| || ||||||||| |||||||    
T  38296939 ttggattccaactccattcgtaaaaaagacaagacggggtatgagtcctatccagcatccacctccaagacaacacctttatctcttcaacc-attcatc 38297037  T
Q  251 cacctggaaatttatacccttaaaaatcttgtcatttctctttttccacataacccaaatggt 313  Q
    ||| |  ||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||    
T  38297038 cacgtcaaaattaatccccttaaaaatcttatcatttctcttcttccacatcacccaaatggt 38297100  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 19450400 - 19450438
Alignment:
Q  203 caacatccacctccaagacaacaccttaatttcttcaac 241  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  19450400 caacatccacctccacgacaacaccttaatctcttcaac 19450438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 19530676 - 19530638
Alignment:
Q  203 caacatccacctccaagacaacaccttaatttcttcaac 241  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  19530676 caacatccacctccacgacaacaccttaatctcttcaac 19530638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 47476591 - 47476473
Alignment:
Q  203 caacatccacctccaagacaacaccttaatttcttcaaccaattcatccacctggaaatttatacccttaaaaatcttgtcatttctctttttccacata 302  Q
    ||||||||| |||||||| ||||| || ||||| ||||||||||| |||||||  |||||  | ||||| || ||||| ||||||||| | ||||||| |    
T  47476591 caacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattccacaaa 47476492  T
Q  303 acccaaatggttgtgtgcc 321  Q
    |||||||| ||||||||||    
T  47476491 acccaaatcgttgtgtgcc 47476473  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 43073759 - 43073795
Alignment:
Q  203 caacatccacctccaagacaacaccttaatttcttca 239  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  43073759 caacaaccacctccaagacaacaccttaatatcttca 43073795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 49036498 - 49036576
Alignment:
Q  153 ggattccaacaccatttgcaaaaatgacaagacggggtgtgagtccattgcaacatccacctccaagacaacaccttaa 231  Q
    ||||||||||||||||   ||||| |||||| ||| ||||||||||  | ||||| ||||||||| |||| ||||||||    
T  49036498 ggattccaacaccattcataaaaaagacaagtcggcgtgtgagtcctctccaacaaccacctccacgacatcaccttaa 49036576  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 26384510 - 26384473
Alignment:
Q  203 caacatccacctccaagacaacaccttaatttcttcaa 240  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  26384510 caacatccatctccaagacaacaccttaatatcttcaa 26384473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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