View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_1 (Length: 671)
Name: NF5992_low_1
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Complemental strand, 864262 - 863676
Alignment:
| Q |
16 |
gtatctaccagaagcagaatttgtctcataaacaagaagatgtgctaatgccacatccttaacatgaacataagattgtgttgcattcacataagttttg |
115 |
Q |
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| T |
864262 |
gtatctaccagaagcagaatttgtctcataaacaagaagatgtgctaatgccacatccttaacatgaacataagattgtgttgcattcacataagttttt |
864163 |
T |
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| Q |
116 |
gcagcaccattaaggtacttgagtatgtgaattgtactagcattaattgttggttgtagcaatggtccaagaaccacaactgggttcaccacaaccaaat |
215 |
Q |
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| T |
864162 |
gcagcaccattaaggtacttgagtatgtgaattgtactagcattaattgttggttgtaacaatggtccaagaactacaactgggttcaccacaaccaaat |
864063 |
T |
|
| Q |
216 |
caacttgattttcttttgctatatcccatgctgattgttcagccactgtcttcccataacaataccagttctgcacaca--aaaaataatttaaattatt |
313 |
Q |
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| T |
864062 |
caacttgattttcttttgctatatcccatgctgattgttcagccactgtcttcccataacaataccagttctgcacacacaaaaaaaaagttaaattatt |
863963 |
T |
|
| Q |
314 |
catcacctaattaattaataaccagatctctgcacaagacgaacatagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatg |
413 |
Q |
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| T |
863962 |
catcacctaattaattaataaccagatctctgcacaagacgaacagagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatg |
863863 |
T |
|
| Q |
414 |
attcatcaacgacaacatctctactagtatttgtgtccatatagaccgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgc |
513 |
Q |
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| T |
863862 |
attcatcaacgacaacatctctactagtatttgggtccatatagaccgttccaatcgatgaagtgaaaacaacacgtcgcactttagcttccgcggacgc |
863763 |
T |
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| Q |
514 |
tataatcacattctttgttccattcactgctggctccaacatctcatcctattatatgttccataaaatgattaatttaccttataa |
600 |
Q |
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| T |
863762 |
tataatcacattcttagttccattcactgctggctctaacatctcatcctattatatgttccataaaatgattaattcaccttataa |
863676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 854182 - 854092
Alignment:
| Q |
367 |
taatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatataga |
458 |
Q |
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| T |
854182 |
taatcaaaccttggtgttcttgcaatattctaaatcactccaatatgaatcat-aaccacaacaaccctacttgtatttgggtccaaataga |
854092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 45243444 - 45243172
Alignment:
| Q |
15 |
agtatctaccagaagcagaatttgtctcataaacaagaagatgtgctaatgccacatccttaacatgaacataagattgtgttgcattcacataagtttt |
114 |
Q |
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| T |
45243444 |
agtatctaccagaagcagaaggtttctcataaacaagtatgtgagctaatgcaacatccctaacatgaacataagcttgtgttgcatttgcataggtctt |
45243345 |
T |
|
| Q |
115 |
ggcagcaccattaaggtacttgagtatgtgaattgtactagcattaattgttggttgtagcaatggtccaagaaccacaactgggttcaccacaaccaaa |
214 |
Q |
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|| | |||| | ||||| || |||||||||||||| || ||||| ||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||| |
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| T |
45243344 |
agctgaaccagttaggtattttagtatgtgaattgtgcttgcattgattgtaggttgtagcaatggtccaagaaccaaaactggattcactacaaccaaa |
45243245 |
T |
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| Q |
215 |
tcaacttgattttcttttgctatatcccatgctgattgttcagccactgtcttcccataacaataccagttct |
287 |
Q |
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| T |
45243244 |
tccacacctttctcttttgctacatcccatgctgctgcttctgccactgctttcccatagcaataccaattct |
45243172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 551
Target Start/End: Complemental strand, 45243091 - 45242914
Alignment:
| Q |
374 |
accttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatatagaccgttccaatcgatg |
473 |
Q |
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|||||||| ||||||||| ||| ||||||||||| | || |||||||| | ||||| ||| |||| | |||||||||||| | ||||| |||| |
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| T |
45243091 |
accttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgcaccaattgatg |
45242992 |
T |
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| Q |
474 |
aagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgctggctcca |
551 |
Q |
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| T |
45242991 |
atgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctcca |
45242914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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