View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_10 (Length: 348)
Name: NF5992_low_10
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 37 - 344
Target Start/End: Complemental strand, 23336879 - 23336572
Alignment:
| Q |
37 |
tgggcttgggcttgagcattagagaatcttgacttgttggtgtttgtttggttgttgcaagggtttgtagctacacgttcacaagaaggacacatagtga |
136 |
Q |
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| T |
23336879 |
tgggcttgggcttgagcattagagaatcttgacttgttggtgtttgtttggttgttgcaagggtttgtagctacacgttcacaagaaggacacatagtga |
23336780 |
T |
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| Q |
137 |
gagtggtagctggaagttgcatgtagaatggttgagtagttttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgt |
236 |
Q |
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| T |
23336779 |
gagtggtagctggaagttgcatgtagaatggttgagtagttttcaaagctctaagctcttgaagttccttttgtaatcttctattctcttctgttaatgt |
23336680 |
T |
|
| Q |
237 |
ctcacaacatctcttcaaatactcacaatccacttctgtttgctttaacttcgtcctacaaaatcacaaattccaaaccaaaactttaataaaaaatagt |
336 |
Q |
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| T |
23336679 |
ctcacaacatctcttcaaatactcacaatccacttctgtttgctttaactttgtcctacaaaatcacaaattccaaaccaaaactttaataaaaaatagt |
23336580 |
T |
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| Q |
337 |
ctctgctc |
344 |
Q |
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|||||||| |
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| T |
23336579 |
ctctgctc |
23336572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 37140784 - 37140605
Alignment:
| Q |
114 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagtagttttcaaagctctaagttcttgaagttctttttgtaat |
213 |
Q |
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| T |
37140784 |
ttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagaagttttcaaagctctcaattcctgaagttccttttgtaat |
37140685 |
T |
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| Q |
214 |
cttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgtttgctttaacttcgtcct |
293 |
Q |
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| T |
37140684 |
cttttattttcttctgtcagagtctcacaacatctttttaagtattcacaatccacttccgtttgctttgacttggtcct |
37140605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 25901523 - 25901716
Alignment:
| Q |
100 |
tttgtagctacacgttcacaagaaggacacatagtgagagtggtagctggaagttgcatgtagaatggttgagtagttttcaaagctctaagttcttgaa |
199 |
Q |
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||||| || ||||||||||||||||| |||||||| | ||| || ||||| | |||||||| |||||| | | |||||| |||||||| | |||||||| |
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| T |
25901523 |
tttgttgcaacacgttcacaagaagggcacatagttaaagtagttgctggtaattgcatgttgaatggatttgaagtttttaaagctcttaattcttgaa |
25901622 |
T |
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| Q |
200 |
gttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgtttgctttaacttcgtcct |
293 |
Q |
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| T |
25901623 |
gttccttgtgtagcctcctattttcttctgttagtgtttcacagcatctctttaagtattcacaatccacttctgtttgcttcaacttagtcct |
25901716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 891235 - 891120
Alignment:
| Q |
178 |
ttcaaagctctaagttcttgaagttctttttgtaatcttctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgttt |
277 |
Q |
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||||| || ||||| ||||| | ||| ||||| || || |||||||| || |||| |||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
891235 |
ttcaatgccctaagctcttgcacttccttttgcaacctcctattctcatcagttagagtctcacagcatctcttcaagtactcacaatccacttcagttt |
891136 |
T |
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| Q |
278 |
gctttaacttcgtcct |
293 |
Q |
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|||| ||||| ||||| |
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| T |
891135 |
gcttcaacttggtcct |
891120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 40300384 - 40300320
Alignment:
| Q |
217 |
ctattctcttctgttaatgtctcacaacatctcttcaaatactcacaatccacttctgtttgctt |
281 |
Q |
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|||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
40300384 |
ctattctcttctgttaatgtttcacaacatttctttaggaactcacaatccacttctgtttgctt |
40300320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 4059158 - 4059101
Alignment:
| Q |
236 |
tctcacaacatctcttcaaatactcacaatccacttctgtttgctttaacttcgtcct |
293 |
Q |
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||||||||||||| |||||| | |||||||| || ||||||||||| ||||| ||||| |
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| T |
4059158 |
tctcacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
4059101 |
T |
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