View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_17 (Length: 239)
Name: NF5992_low_17
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 35366369 - 35366483
Alignment:
| Q |
111 |
aaaggaaatctcaaactttttattttactgggggcgtaaatcaaaaccaacccaaatgatagaggataaacatatattaatccttaaatttttaggtcct |
210 |
Q |
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| T |
35366369 |
aaaggaaatctcaaactttttattttacaaggggcgtaaattaaaatcaactcaaatgacagaggataaacatatattaatccttaaatttttagatcct |
35366468 |
T |
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| Q |
211 |
ctcatgtatatattg |
225 |
Q |
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| T |
35366469 |
ctcatttatatattg |
35366483 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 35366018 - 35366069
Alignment:
| Q |
11 |
agaatataaatatttcactcttgtaatcaaatctcatctcatctcataacat |
62 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35366018 |
agaatataaatatttcactgttgtaatcaaatctcatctcatctcataacat |
35366069 |
T |
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