View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5992_low_18 (Length: 228)

Name: NF5992_low_18
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5992_low_18
NF5992_low_18
[»] scaffold0234 (2 HSPs)
scaffold0234 (18-153)||(10070-10205)
scaffold0234 (18-153)||(1177-1312)
[»] chr4 (26 HSPs)
chr4 (18-153)||(18263426-18263561)
chr4 (18-150)||(18270287-18270419)
chr4 (18-154)||(10620166-10620301)
chr4 (18-152)||(8859406-8859540)
chr4 (18-154)||(5715187-5715321)
chr4 (18-152)||(28392002-28392135)
chr4 (18-149)||(20579275-20579405)
chr4 (18-154)||(10825187-10825320)
chr4 (18-154)||(26971679-26971812)
chr4 (18-153)||(26964785-26964917)
chr4 (18-153)||(5708551-5708686)
chr4 (18-152)||(55613922-55614055)
chr4 (18-131)||(19919386-19919499)
chr4 (18-152)||(869835-869968)
chr4 (18-131)||(19925615-19925728)
chr4 (18-152)||(47387788-47387922)
chr4 (18-152)||(10676422-10676557)
chr4 (18-152)||(10890062-10890197)
chr4 (18-131)||(5667048-5667162)
chr4 (29-152)||(4425468-4425590)
chr4 (18-152)||(35224766-35224903)
chr4 (35-79)||(10627327-10627372)
chr4 (72-136)||(55992914-55992978)
chr4 (54-89)||(49066009-49066044)
chr4 (112-153)||(10627273-10627313)
chr4 (18-47)||(27031787-27031816)
[»] chr6 (12 HSPs)
chr6 (18-153)||(17690299-17690433)
chr6 (18-153)||(29310104-29310238)
chr6 (18-152)||(29317063-29317196)
chr6 (18-154)||(11652912-11653047)
chr6 (18-153)||(27278581-27278715)
chr6 (18-153)||(27297873-27298007)
chr6 (18-153)||(27303472-27303606)
chr6 (18-153)||(27380086-27380220)
chr6 (18-153)||(27470469-27470603)
chr6 (48-153)||(16393338-16393442)
chr6 (64-131)||(28755135-28755202)
chr6 (51-85)||(19346305-19346339)
[»] chr3 (26 HSPs)
chr3 (18-153)||(15599743-15599877)
chr3 (18-153)||(15606288-15606422)
chr3 (18-152)||(13691896-13692029)
chr3 (18-151)||(10578193-10578325)
chr3 (18-152)||(6111314-6111446)
chr3 (18-153)||(13212514-13212648)
chr3 (18-152)||(8491598-8491731)
chr3 (18-152)||(13258759-13258892)
chr3 (18-150)||(10571427-10571559)
chr3 (18-152)||(13518023-13518156)
chr3 (18-152)||(17780025-17780156)
chr3 (18-152)||(19081326-19081457)
chr3 (18-152)||(16481318-16481451)
chr3 (18-152)||(18534851-18534984)
chr3 (18-152)||(15341077-15341212)
chr3 (18-131)||(1646374-1646489)
chr3 (18-153)||(15356443-15356579)
chr3 (19-152)||(18538210-18538342)
chr3 (18-152)||(32055274-32055408)
chr3 (18-131)||(23014221-23014336)
chr3 (53-152)||(12564395-12564493)
chr3 (18-131)||(16201433-16201546)
chr3 (87-152)||(25801443-25801508)
chr3 (38-85)||(17196702-17196749)
chr3 (41-131)||(6288199-6288288)
chr3 (51-148)||(47699511-47699607)
[»] chr7 (14 HSPs)
chr7 (18-152)||(11534921-11535055)
chr7 (18-153)||(11541839-11541973)
chr7 (18-148)||(2652852-2652981)
chr7 (18-152)||(29329002-29329135)
chr7 (18-153)||(15153681-15153816)
chr7 (28-150)||(12739764-12739886)
chr7 (18-152)||(12752073-12752206)
chr7 (27-153)||(11557074-11557199)
chr7 (20-150)||(18256679-18256809)
chr7 (33-152)||(18562267-18562385)
chr7 (20-149)||(9979044-9979174)
chr7 (53-88)||(7748213-7748248)
chr7 (32-76)||(22947653-22947697)
chr7 (54-88)||(30918034-30918068)
[»] scaffold0657 (1 HSPs)
scaffold0657 (18-153)||(3931-4065)
[»] scaffold0433 (1 HSPs)
scaffold0433 (18-153)||(8322-8456)
[»] chr1 (9 HSPs)
chr1 (18-153)||(18253244-18253378)
chr1 (18-153)||(27309411-27309546)
chr1 (18-152)||(27130257-27130390)
chr1 (18-149)||(18531376-18531506)
chr1 (18-131)||(16357911-16358026)
chr1 (47-152)||(21169283-21169388)
chr1 (53-154)||(9075749-9075851)
chr1 (18-130)||(22640728-22640844)
chr1 (53-140)||(25662281-25662366)
[»] scaffold0203 (1 HSPs)
scaffold0203 (28-153)||(29045-29169)
[»] chr8 (10 HSPs)
chr8 (18-150)||(21941881-21942012)
chr8 (18-146)||(28549248-28549376)
chr8 (18-152)||(15327437-15327569)
chr8 (18-152)||(15507806-15507938)
chr8 (18-152)||(6095360-6095492)
chr8 (18-152)||(22172699-22172836)
chr8 (18-118)||(24644162-24644263)
chr8 (34-152)||(29230589-29230706)
chr8 (18-146)||(24795853-24795980)
chr8 (55-152)||(27660698-27660795)
[»] scaffold1199 (1 HSPs)
scaffold1199 (18-152)||(339-472)
[»] scaffold0220 (1 HSPs)
scaffold0220 (18-152)||(19527-19660)
[»] scaffold0061 (1 HSPs)
scaffold0061 (18-139)||(5069-5189)
[»] scaffold0390 (2 HSPs)
scaffold0390 (18-149)||(12787-12918)
scaffold0390 (18-109)||(5811-5902)
[»] scaffold0213 (1 HSPs)
scaffold0213 (18-153)||(4454-4588)
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-149)||(26427-26557)
[»] chr5 (10 HSPs)
chr5 (18-131)||(18565335-18565450)
chr5 (18-153)||(24694319-24694453)
chr5 (18-153)||(24701088-24701222)
chr5 (18-121)||(19713396-19713500)
chr5 (18-152)||(28718819-28718951)
chr5 (32-155)||(39539758-39539882)
chr5 (51-145)||(22546232-22546323)
chr5 (51-131)||(17297875-17297953)
chr5 (53-136)||(938396-938477)
chr5 (51-132)||(17313949-17314029)
[»] scaffold0705 (1 HSPs)
scaffold0705 (18-153)||(7496-7632)
[»] chr2 (5 HSPs)
chr2 (18-131)||(22790711-22790826)
chr2 (18-152)||(18621050-18621184)
chr2 (32-152)||(41664996-41665115)
chr2 (58-140)||(27353600-27353686)
chr2 (21-130)||(44856103-44856211)
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-152)||(6742-6877)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-152)||(107107-107240)
[»] scaffold1303 (1 HSPs)
scaffold1303 (18-100)||(892-974)
[»] scaffold0502 (1 HSPs)
scaffold0502 (19-152)||(261-394)
[»] scaffold0008 (2 HSPs)
scaffold0008 (18-135)||(229259-229380)
scaffold0008 (152-219)||(59375-59442)
[»] scaffold0039 (1 HSPs)
scaffold0039 (18-152)||(87925-88059)


Alignment Details
Target: scaffold0234 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 10205 - 10070
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10205 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 10106  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10105 aaaattttgaaaaaacccctcttaaaatcccttcag 10070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 1312 - 1177
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1312 gtaaacacatgaatcttaaagtgtttaagtttctaattgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 1213  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1212 aaaattttgaaaaaacccctcttaaaatcccttcag 1177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 18263426 - 18263561
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18263426 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 18263525  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18263526 aaaattttgaaaaaacccctcttaaaatcccttcag 18263561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 18270287 - 18270419
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18270287 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 18270386  T
Q  118 aaaattttgaaaaaacccctcttcaaatccctt 150  Q
    ||||||||||||||||||||||| |||||||||    
T  18270387 aaaattttgaaaaaacccctcttaaaatccctt 18270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 10620301 - 10620166
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10620301 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatctgtttcaatgggatttcttccgcaaagaggatt 10620202  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcaga 154  Q
    |||||||||| |||||||||||| |||||||||||||    
T  10620201 aaaattttga-aaaacccctcttaaaatcccttcaga 10620166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8859406 - 8859540
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  8859406 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttctttcggaaagaggatt 8859505  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||||||| |||||||| |||||||||||    
T  8859506 aaaattttgaaaaaccccctcttaaaatcccttca 8859540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 5715187 - 5715321
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5715187 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagaggatt 5715286  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcaga 154  Q
    |||||||||  |||||||||||| |||||||||||||    
T  5715287 aaaattttg--aaaacccctcttaaaatcccttcaga 5715321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 28392135 - 28392002
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  28392135 gtaaacatatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagaggatt 28392036  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||| |||||||||||| |||||||||||    
T  28392035 aaaattttga-aaaacccctcttaaaatcccttca 28392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 20579405 - 20579275
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20579405 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 20579306  T
Q  118 aaaattttgaaaaaacccctcttcaaatccct 149  Q
    ||| ||||| ||||||||||||| ||||||||    
T  20579305 aaatttttg-aaaaacccctcttaaaatccct 20579275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 10825320 - 10825187
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10825320 gtaaacacatgaat--taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatctgtttcaatgggatttattccgcaaagaggatt 10825223  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcaga 154  Q
    |||||||||| |||||||||||| |||||||||||||    
T  10825222 aaaattttga-aaaacccctcttaaaatcccttcaga 10825187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 26971679 - 26971812
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||    
T  26971679 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcggtttcaatgggatttcttccgc--agaggatt 26971776  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcaga 154  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  26971777 aaaattttg-aaaaacccctcttaaaatcccttcaga 26971812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 26964785 - 26964917
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||    
T  26964785 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcggtttcaatgggatttcttccgc--agaggatt 26964882  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  26964883 aaaattttg-aaaaacccctcttaaaatcccttcag 26964917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 5708551 - 5708686
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaa--agagga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||    
T  5708551 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccacaaagagagga 5708650  T
Q  116 ttaaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||||  |||||||||||| ||||||||||||    
T  5708651 ttaaaattttg--aaaacccctcttaaaatcccttcag 5708686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 55613922 - 55614055
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  55613922 gtaaacacatgaatcttaaagtgtttaagtttttatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 55614021  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
     |||||||| ||||||||||||| |||||||||||    
T  55614022 taaattttg-aaaaacccctcttaaaatcccttca 55614055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 19919499 - 19919386
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  19919499 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcattgggatttcttccgcaaagaggatt 19919400  T
Q  118 aaaattttgaaaaa 131  Q
    ||| ||||||||||    
T  19919399 aaatttttgaaaaa 19919386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 869835 - 869968
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||    
T  869835 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaataggatttcttccgcaaagagaatt 869934  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||| ||||| ||||| ||||||| |||||||||||    
T  869935 aaatttttg-aaaaatccctcttaaaatcccttca 869968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 19925728 - 19925615
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  19925728 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgttttattgggatttcttccgcaaagaggatt 19925629  T
Q  118 aaaattttgaaaaa 131  Q
    ||| ||||||||||    
T  19925628 aaatttttgaaaaa 19925615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 47387922 - 47387788
Alignment:
Q  18 gtaaacacatgaat-cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    |||||||||||||| |||||| || |||| | | |||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  47387922 gtaaacacatgaattcttaaattgcttaaatatgtgttagatgtgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagaggat 47387823  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||| |||||||||||| |||||||||||    
T  47387822 taaaattttga-aaaacccctcttgaaatcccttca 47387788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 10676557 - 10676422
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaaga-tccg-tttcaatgggattttttccgcaaagagga 115  Q
    ||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  10676557 gtaaacacatgaattcgtaagtgtttaagtttgtgtttgatttgtgattaatgatttaatcaagattccgttttcaatgggatttgttccgctaagagga 10676458  T
Q  116 ttaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||| |||||||||| ||||||| |||||||||||    
T  10676457 ttaaaaatttgaaaaaa-ccctctttaaatcccttca 10676422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 10890197 - 10890062
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaaga-tccg-tttcaatgggattttttccgcaaagagga 115  Q
    ||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  10890197 gtaaacacatgaattcgtaagtgtttaagtttgtgtttgatttgtgattaatgatttaatcaagattccgttttcaatgggatttgttccgctaagagga 10890098  T
Q  116 ttaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||| |||||||||| ||||||| |||||||||||    
T  10890097 ttaaaaatttgaaaaaa-ccctctttaaatcccttca 10890062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 5667162 - 5667048
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||| ||    
T  5667162 gtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgtttcaataagatttcttccgcagagagcat 5667063  T
Q  117 taaaattttgaaaaa 131  Q
    |||||||||||||||    
T  5667062 taaaattttgaaaaa 5667048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 4425590 - 4425468
Alignment:
Q  29 aatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatta-aaattttga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||  ||||||||| ||| ||||     
T  4425590 aatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatctgtttcaatgagatttgttccgcttagaggattataaaatttg- 4425492  T
Q  128 aaaaacccctcttcaaatcccttca 152  Q
    ||||||| ||||| |||||||||||    
T  4425491 aaaaacctctctt-aaatcccttca 4425468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 35224766 - 35224903
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc-----aatgggattttttccgcaaaga 112  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||     |||||||||| |||||   |||    
T  35224766 gtaaacacatgaat-ttaaagtgtttaagtttgtgtttgatttgtgattgatgatttaatcaagatccgtttcattttaatgggatttattccgttgaga 35224864  T
Q  113 ggattaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||||||| |||| |||||||| |||||||||||    
T  35224865 ggattaaaattttg-aaaaccccctcttgaaatcccttca 35224903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 10627372 - 10627327
Alignment:
Q  35 aaagtgtttaagttt-ctgtttgatttgtgattaatgatttaatca 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10627372 aaagtgtttaagttttctgtttgatttgtgattaatgatttaatca 10627327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 55992914 - 55992978
Alignment:
Q  72 tttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccc 136  Q
    |||||||||||||||||| |||| ||||| ||  || ||||||||||||||||||||| ||||||    
T  55992914 tttaatcaagatccgttttaatgagatttgttttgctaagaggattaaaattttgaaagaacccc 55992978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 49066009 - 49066044
Alignment:
Q  54 ttgatttgtgattaatgatttaatcaagatccgttt 89  Q
    |||||||||||||||||||||||||||||| |||||    
T  49066009 ttgatttgtgattaatgatttaatcaagattcgttt 49066044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 10627313 - 10627273
Alignment:
Q  112 aggattaaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  10627313 aggattaaaattttgaaaaa-cccctcttaaaatcccttcag 10627273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 27031787 - 27031816
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagt 47  Q
    ||||||||||||||||||||||||||||||    
T  27031787 gtaaacacatgaatcttaaagtgtttaagt 27031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 17690433 - 17690299
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17690433 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 17690334  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||| |||||||||||| ||||||||||||    
T  17690333 aaaattttga-aaaacccctcttaaaatcccttcag 17690299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 29310104 - 29310238
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  29310104 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcattgggatttcttccgcaaagaggatt 29310203  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  29310204 aaaattttg-aaaaacccctcttaaaatcccttcag 29310238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 29317063 - 29317196
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  29317063 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcattgggatttcttccgcaaagaggatt 29317162  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||||||||| |||||||||||    
T  29317163 aaaattttg-aaaaacccctcttaaaatcccttca 29317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 11652912 - 11653047
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  11652912 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagattcgtttcaatgggatttcttccgcaaagaggatt 11653011  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcaga 154  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  11653012 aaaattttgaaaaaa-ccctcttaaaatcccttcaga 11653047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 27278581 - 27278715
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27278581 gtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27278680  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    || |||||| ||||||||||||| ||||||||||||    
T  27278681 aatattttg-aaaaacccctcttaaaatcccttcag 27278715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 27297873 - 27298007
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27297873 gtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27297972  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    || |||||| ||||||||||||| ||||||||||||    
T  27297973 aatattttg-aaaaacccctcttaaaatcccttcag 27298007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 27303472 - 27303606
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27303472 gtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27303571  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    || |||||| ||||||||||||| ||||||||||||    
T  27303572 aatattttg-aaaaacccctcttaaaatcccttcag 27303606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 27380220 - 27380086
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27380220 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27380121  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||| ||||| ||||||||||||| ||||||||||||    
T  27380120 aaatttttg-aaaaacccctcttaaaatcccttcag 27380086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 27470603 - 27470469
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27470603 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27470504  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||| ||||| ||||||||||||| ||||||||||||    
T  27470503 aaatttttg-aaaaacccctcttaaaatcccttcag 27470469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 16393442 - 16393338
Alignment:
Q  48 ttctgtttgatttgtgattaatgatttaatcaagatccg-tttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatc 146  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||||||||  |||||||  |||||| |||||  |||||    
T  16393442 ttctggttgatttgtgattaatgatttaataaagatccgttttcaatgagatttgtaccgctaagaggat--aaatttttgaaaaactcctctcaaaatc 16393345  T
Q  147 ccttcag 153  Q
    |||||||    
T  16393344 ccttcag 16393338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 28755202 - 28755135
Alignment:
Q  64 attaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaa 131  Q
    |||| |||||||||||||||| |||||| ||| |||| |||||| |||| ||||||||||||||||||    
T  28755202 attagtgatttaatcaagatctgtttcagtggaatttgttccgccaagatgattaaaattttgaaaaa 28755135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 19346339 - 19346305
Alignment:
Q  51 tgtttgatttgtgattaatgatttaatcaagatcc 85  Q
    |||||||||||||||||||| ||||||||||||||    
T  19346339 tgtttgatttgtgattaatggtttaatcaagatcc 19346305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 15599877 - 15599743
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15599877 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 15599778  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||| |||||||||||| ||||||||||||    
T  15599777 aaaattttga-aaaacccctcttaaaatcccttcag 15599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 15606422 - 15606288
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15606422 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 15606323  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||| |||||||||||| ||||||||||||    
T  15606322 aaaattttga-aaaacccctcttaaaatcccttcag 15606288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 13691896 - 13692029
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13691896 gtaaacacatgaatcttaaagtgtttaagtttctgtatgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 13691995  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| |||||||||||||||||||||||||    
T  13691996 aaaattttg-aaaaacccctcttcaaatcccttca 13692029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 10578325 - 10578193
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10578325 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 10578226  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttc 151  Q
    |||||||||| |||||||||||| ||||||||||    
T  10578225 aaaattttga-aaaacccctcttaaaatcccttc 10578193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 6111314 - 6111446
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6111314 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaacatccgtttcaatgggatttcttccgcaaagaggatt 6111413  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||||||  ||||||| |||||||||||    
T  6111414 aaaattttgaaaaa--ccctcttaaaatcccttca 6111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 13212514 - 13212648
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13212514 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 13212613  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| |||||| |||||| ||||||||||||    
T  13212614 aaaattttg-aaaaactcctcttaaaatcccttcag 13212648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8491598 - 8491731
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8491598 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 8491697  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||| ||||| ||||||||||||| |||||||||||    
T  8491698 aaatttttg-aaaaacccctcttaaaatcccttca 8491731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 13258759 - 13258892
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13258759 gtaaacacatgaatcttaaaatgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 13258858  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||||||||| |||||||||||    
T  13258859 aaaattttg-aaaaacccctcttaaaatcccttca 13258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 10571559 - 10571427
Alignment:
Q  18 gtaaacacatgaatcttaaa-gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10571559 gtaaacacatgaatcttaaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggat 10571460  T
Q  117 taaaattttgaaaaaacccctcttcaaatccctt 150  Q
    ||||||||||| |||||||||||| |||||||||    
T  10571459 taaaattttga-aaaacccctcttaaaatccctt 10571427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 13518023 - 13518156
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |    
T  13518023 gtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttctgcaaagaggaat 13518122  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||||||||| |||||||||||    
T  13518123 aaaattttg-aaaaacccctcttaaaatcccttca 13518156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 17780156 - 17780025
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  17780156 gtaaacacatgaatctttaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc-atgggatttcttccgcaaagaggatt 17780058  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||  |||||||||||| |||||||||||    
T  17780057 aaaattttg--aaaacccctcttaaaatcccttca 17780025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 19081457 - 19081326
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  19081457 gtaaacacatgaatctttaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc-atgggatttcttccgcaaagaggatt 19081359  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||  |||||||||||| |||||||||||    
T  19081358 aaaattttg--aaaacccctcttaaaatcccttca 19081326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 16481451 - 16481318
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  16481451 gtaaacacatgaatcttaaagtgtttaagtttttatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 16481352  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
     ||||||||| |||||||||||| |||||||||||    
T  16481351 taaattttga-aaaacccctcttaaaatcccttca 16481318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 18534851 - 18534984
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||    
T  18534851 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttctgtaaagaggatt 18534950  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||| ||||||| |||||||||||    
T  18534951 aaaattttg-aaaaatccctcttaaaatcccttca 18534984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 15341212 - 15341077
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  15341212 gtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagatccgtttcaatgggatttgttccgcttagaggatt 15341113  T
Q  118 a-aaattttgaaaaaacccctcttcaaatcccttca 152  Q
    | ||| |||| ||||||| ||||| |||||||||||    
T  15341112 ataaaatttggaaaaacctctcttaaaatcccttca 15341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 1646489 - 1646374
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||     
T  1646489 gtaaacacattaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttgttccgctaagaggatt 1646390  T
Q  117 -taaaattttgaaaaa 131  Q
     |||||||||||||||    
T  1646389 ataaaattttgaaaaa 1646374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 15356579 - 15356443
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||    
T  15356579 gtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagatccgtttcaatgagatttgttccgcttagaggatt 15356480  T
Q  118 a-aaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    | ||| |||| ||||||| ||||| ||||||||||||    
T  15356479 ataaaatttggaaaaacctctcttaaaatcccttcag 15356443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 18538210 - 18538342
Alignment:
Q  19 taaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatta 118  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  18538210 taaacacatgaatcttaaagtgtttaagtttctatttaatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttctgtaaagaggatta 18538309  T
Q  119 aaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||| ||||| | ||||| |||||||||||    
T  18538310 aaattttg-aaaaatctctcttaaaatcccttca 18538342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 32055408 - 32055274
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||     
T  32055408 gtaaacacatgaatcttaaagtgtttcaatttctatttgatttgtgattaatgatttaatcaagatccgtttcaatggaatttcttccgcaaagaggatt 32055309  T
Q  117 -taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
     |||||||||| ||||||| ||||| |||||||||||    
T  32055308 ataaaattttg-aaaaacctctctt-aaatcccttca 32055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 23014336 - 23014221
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |||||| ||||||||     
T  23014336 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatatgtttcaatgggaattgttccgctaagaggatt 23014237  T
Q  117 -taaaattttgaaaaa 131  Q
     |||||||||||||||    
T  23014236 ataaaattttgaaaaa 23014221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 12564395 - 12564493
Alignment:
Q  53 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  12564395 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggattaaaattttg-aaaaacccctcttaaaatcccttca 12564493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 16201433 - 16201546
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||| | ||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||  ||||||||| || ||| |||||||||    
T  16201433 gtaaacacattactcttaaaatgtttaagtttttgtttgatttgtgagtaatgatttaatcaagattcgttttcatgggatttctttcgctaagaggatt 16201532  T
Q  118 aaaattttgaaaaa 131  Q
    ||||||||||||||    
T  16201533 aaaattttgaaaaa 16201546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 25801443 - 25801508
Alignment:
Q  87 tttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  25801443 tttcaatgggatttgttccactaagaggattaaaattttgaaaaaacccctctttaaatcccttca 25801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 17196749 - 17196702
Alignment:
Q  38 gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 85  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  17196749 gtgtttaagtttttgtttgatttgtgattaatgatttaatcaagatcc 17196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 6288288 - 6288199
Alignment:
Q  41 tttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaa 131  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||| ||  | ||||| |||  | |||||||||||||||||||||||    
T  6288288 tttaagttgttgtttaatttgtgattaatgatttaatcaagatccgtt-catcgagatttattctactaagaggattaaaattttgaaaaa 6288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 47699607 - 47699511
Alignment:
Q  51 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatccc 148  Q
    |||||||||| |||||||||| |||||||||| |||| | | ||| |||| |||| | |||||||||||||||| ||||| ||||||||| |||||||    
T  47699607 tgtttgatttatgattaatgacttaatcaagacccgtct-attggaatttattcctctaagaggattaaaatttggaaaatacccctcttgaaatccc 47699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 11535055 - 11534921
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  11535055 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttatgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 11534956  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||||||||||||||| |||||||||||    
T  11534955 aaaattttgaaaaaacccctcttaaaatcccttca 11534921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 11541973 - 11541839
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  11541973 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 11541874  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  11541873 aaaattttgaaaaaa-ccctcttaaaatcccttcag 11541839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 2652981 - 2652852
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2652981 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 2652882  T
Q  118 aaaattttgaaaaaacccctcttcaaatccc 148  Q
    |||||||||| |||||||||||| |||||||    
T  2652881 aaaattttga-aaaacccctcttaaaatccc 2652852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 29329002 - 29329135
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29329002 gtaaacacatgaatcttaaaatgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttctgcaaagaggatt 29329101  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| |||| |||||||| |||||||||||    
T  29329102 aaaattttg-aaaatcccctcttaaaatcccttca 29329135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 15153681 - 15153816
Alignment:
Q  18 gtaaacacatgaatctt-aaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15153681 gtaaacacatgaatctttaaagtgtttaaatttctgtttgatttgtgagtaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggat 15153780  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  15153781 taaaattttg-aaaaacccctcttaaaatcccttcag 15153816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 12739764 - 12739886
Alignment:
Q  28 gaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttga 127  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||    
T  12739764 gaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaataggatttcttccgcaaagagaattaaaatttcga 12739863  T
Q  128 aaaaacccctcttcaaatccctt 150  Q
    ||||||||||||| |||||||||    
T  12739864 aaaaacccctcttaaaatccctt 12739886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 12752073 - 12752206
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  12752073 gtaaacacatgaatcttaaagtgtttaagtttctttttgatttttgattaatgatttaattaagatccgtttcaatgggatttcttccgtaaagaggatt 12752172  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||||||||| |||||| ||||    
T  12752173 aaaattttg-aaaaacccctcttaaaatccattca 12752206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 11557199 - 11557074
Alignment:
Q  27 tgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||     
T  11557199 tgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagacggttaaaatttt- 11557101  T
Q  127 aaaaaacccctcttcaaatcccttcag 153  Q
    ||||| |||||||| ||||||||||||    
T  11557100 aaaaaccccctcttaaaatcccttcag 11557074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 18256809 - 18256679
Alignment:
Q  20 aaacacatgaatct-taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatta 118  Q
    |||||||||||||  |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  18256809 aaacacatgaatccctaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttgttccgctaagaggatta 18256710  T
Q  119 aaattttgaaaaaacccctcttcaaatccctt 150  Q
    || ||||| ||||||||||||| |||||||||    
T  18256709 aatttttg-aaaaacccctctttaaatccctt 18256679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 18562267 - 18562385
Alignment:
Q  33 ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaa 132  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||| |||||    
T  18562267 ttaaagtgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttcctcaaagagtattaaaattttg-aaaaa 18562365  T
Q  133 cccctcttcaaatcccttca 152  Q
    |||||||| |||||||||||    
T  18562366 cccctcttaaaatcccttca 18562385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 9979044 - 9979174
Alignment:
Q  20 aaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg-tttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||| ||||| | ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9979044 aaacacatgaatccttaaattatttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgttttcaatgggatttcttccgcaaagaggatt 9979143  T
Q  118 aaaattttgaaaaaacccctcttcaaatccct 149  Q
    ||||||||  ||||||||||||| ||||||||    
T  9979144 aaaatttt-caaaaacccctcttaaaatccct 9979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 7748213 - 7748248
Alignment:
Q  53 tttgatttgtgattaatgatttaatcaagatccgtt 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  7748213 tttgatttgtgattaatgatttaatcaagatccgtt 7748248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 22947697 - 22947653
Alignment:
Q  32 cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaa 76  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||    
T  22947697 cttaaagggtttaattatctgtttgatttgtgattaatgatttaa 22947653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 30918034 - 30918068
Alignment:
Q  54 ttgatttgtgattaatgatttaatcaagatccgtt 88  Q
    |||||||||||||||||||||||||| ||||||||    
T  30918034 ttgatttgtgattaatgatttaatcatgatccgtt 30918068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 3931 - 4065
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  3931 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 4030  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| |||||| |||||| ||||||||||||    
T  4031 aaaattttg-aaaaactcctcttaaaatcccttcag 4065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 8322 - 8456
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  8322 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgtttaatgatttaatcaagattcgtttcaatgggatttcttccgcaaagaggatt 8421  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  8422 aaaattttg-aaaaacccctcttaaaatcccttcag 8456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 18253244 - 18253378
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  18253244 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaataatttaatcaagatccgtttcaatgggatttcttctgcaaagaggatt 18253343  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  18253344 aaaattttg-aaaaacccctcttaaaatcccttcag 18253378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 27309546 - 27309411
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||    
T  27309546 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaatatttgtttcaatgggatttcttccgcaaagaggatt 27309447  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||||||||||| |||||||| ||||||||||||    
T  27309446 aaaattttgaaaaaccccctcttaaaatcccttcag 27309411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 27130390 - 27130257
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27130390 gtaatcacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 27130291  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||| |||||||||||| |||||| ||||    
T  27130290 aaaattttga-aaaacccctcttaaaatcctttca 27130257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 18531506 - 18531376
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  18531506 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcattgggatttcttccgcaaagaggatt 18531407  T
Q  118 aaaattttgaaaaaacccctcttcaaatccct 149  Q
    |||||||||| |||| ||||||| ||||||||    
T  18531406 aaaattttga-aaaatccctcttaaaatccct 18531376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 16358026 - 16357911
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||     
T  16358026 gtaaacacatgaatcttaaagtgtttaaatttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttgttccgctaagaggatt 16357927  T
Q  117 -taaaattttgaaaaa 131  Q
     |||||||||||||||    
T  16357926 ataaaattttgaaaaa 16357911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 21169388 - 21169283
Alignment:
Q  47 tttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatc 146  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||  |||||||| |||||    
T  21169388 tttctgtttgatttgtgattaatgatttaatcaagatccttttcaatgggatttcttccgcaaagaggatcaaaattttgaaaacccccctcttaaaatc 21169289  T
Q  147 ccttca 152  Q
    ||||||    
T  21169288 ccttca 21169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 9075851 - 9075749
Alignment:
Q  53 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat--taaaattttgaaaaaacccctcttcaaatccctt 150  Q
    |||||||||||||||||  ||||||||||| ||||||||||| ||||| |||||| ||||||||  |||||||||| ||||||||||||| |||||||||    
T  9075851 tttgatttgtgattaattctttaatcaagacccgtttcaatgagatttgttccgctaagaggattataaaattttg-aaaaacccctctttaaatccctt 9075753  T
Q  151 caga 154  Q
    ||||    
T  9075752 caga 9075749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 22640844 - 22640728
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttg-----atttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaaga 112  Q
    ||||||||||||  |||||||||||||||| | |||||      |||| |||||||||||||||||||||||| ||| |||||||||| |||||| ||||    
T  22640844 gtaaacacatgatccttaaagtgtttaagtatgtgttttgattaatttatgattaatgatttaatcaagatccattttaatgggatttgttccgctaaga 22640745  T
Q  113 ggattaaaattttgaaaa 130  Q
     |||||||||||||||||    
T  22640744 -gattaaaattttgaaaa 22640728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 25662281 - 25662366
Alignment:
Q  53 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctctt 140  Q
    |||||||||||||||||||||||||||| ||||| ||||  ||||||| |||||| || |  || ||||||||| |||||||||||||    
T  25662281 tttgatttgtgattaatgatttaatcaatatccg-ttcatcgggatttattccgctaacaaaatgaaaattttg-aaaaacccctctt 25662366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 29169 - 29045
Alignment:
Q  28 gaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29169 gaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttga 29070  T
Q  128 aaaaacccctcttcaaatcccttcag 153  Q
     |||||||||||| ||||||||||||    
T  29069 -aaaacccctcttaaaatcccttcag 29045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 21941881 - 21942012
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21941881 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgagattttttccgcatagaggatt 21941980  T
Q  118 aaaattttgaaaaaacccctcttcaaatccctt 150  Q
    ||||||||| ||||||||||||| |||||||||    
T  21941981 aaaattttg-aaaaacccctcttaaaatccctt 21942012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 28549248 - 28549376
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  28549248 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagaggatt 28549347  T
Q  118 aaaattttgaaaaaacccctcttcaaatc 146  Q
    |||||| ||||||| || ||||| |||||    
T  28549348 aaaattgtgaaaaaccctctcttaaaatc 28549376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15327437 - 15327569
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  15327437 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaatatccgtttcaatgggatttcttccgcaaagaggatt 15327536  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||| ||||| |||||||||||    
T  15327537 aaaattttg-aaaaacctctctt-aaatcccttca 15327569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15507806 - 15507938
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  15507806 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaatatccgtttcaatgggatttcttccgcaaagaggatt 15507905  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||| ||||| |||||||||||    
T  15507906 aaaattttg-aaaaacctctctt-aaatcccttca 15507938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 6095360 - 6095492
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6095360 gtaaacacatgaatcttaaagtatttaaatttctatttgattagtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 6095459  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||||||  ||||||| |||||||||||    
T  6095460 aaaattttgaaaaa--ccctcttaaaatcccttca 6095492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22172699 - 22172836
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||     
T  22172699 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttatgattaatgatttaatcaagatccgtttcaatgggatttgttccgctaagcggatt 22172798  T
Q  117 -taaaattttg-aaaaaacccctcttcaaatcccttca 152  Q
     |||||||||| |||||||| ||||| |||||||||||    
T  22172799 ataaaattttgaaaaaaacctctcttaaaatcccttca 22172836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 24644162 - 24644263
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg-tttcaatgggattttttccgcaaagaggat 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  24644162 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgttttcaatggaatttgttccgctaagaggat 24644261  T
Q  117 ta 118  Q
    ||    
T  24644262 ta 24644263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 29230589 - 29230706
Alignment:
Q  34 taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaac 133  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||| |||| |||||||||||| ||||||     
T  29230589 taaaatgtttaagtttgtgtttgatttgtgattgatgatttaatcaagatctgtttcaatgagatttattccgctaagatgattaaaatttt-aaaaaaa 29230687  T
Q  134 ccctcttcaaatcccttca 152  Q
    ||||||| |||||||||||    
T  29230688 ccctcttgaaatcccttca 29230706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 24795980 - 24795853
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaa-gtttctgtttgatttgtgattaatgatttaatcaagatccg-tttcaatgggattttttccgcaaagagga 115  Q
    |||||||||||||||   |||||||||| |||| ||||||||||||||||||||||||||| || ||||| ||||||||  |||| |||||| |||||||    
T  24795980 gtaaacacatgaatcc--aagtgtttaaagtttgtgtttgatttgtgattaatgatttaatgaaaatccgttttcaatgaaatttgttccgctaagagga 24795883  T
Q  116 ttaaaattttgaaaaaacccctcttcaaatc 146  Q
    ||||||||||| || |||||||||| |||||    
T  24795882 ttaaaattttg-aataacccctcttaaaatc 24795853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 27660795 - 27660698
Alignment:
Q  55 tgatttgtgattaatgatttaatcaagatccgttt-caatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||| ||||||||||||||||| | ||| ||||||||||| |||||| ||||||||||||||||||| |||||| ||||| |||||| ||||    
T  27660795 tgatttgtgataaatgatttaatcaagattcattttcaatgggatttcttccgctaagaggattaaaattttga-aaaacctctcttaaaatcctttca 27660698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 339 - 472
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  339 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttcagaaaagaggatt 438  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||| ||||||||||||| |||||||||||    
T  439 aaaattttg-aaaaacccctcttaaaatcccttca 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 19527 - 19660
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19527 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggatt 19626  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||| ||||| |||||| |||||| |||||||||||    
T  19627 aaatttttg-aaaaactcctcttaaaatcccttca 19660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 5189 - 5069
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5189 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcattgggatttcttccgcaaagaggatt 5090  T
Q  118 aaaattttgaaaaaacccctct 139  Q
    |||||||| |||||||||||||    
T  5089 aaaatttt-aaaaaacccctct 5069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 12918 - 12787
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  12918 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgttttaatgggatttcttccgcaaagaggatt 12819  T
Q  118 aaaattttgaaaaaacccctcttcaaatccct 149  Q
    ||||||||  ||||||| ||||  ||||||||    
T  12818 aaaatttttgaaaaacctctctcaaaatccct 12787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 5902 - 5811
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  5902 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaataatttaatcaagatccgttttaatgggatttcttccgcaa 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 4454 - 4588
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||    
T  4454 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttattctataaagaggatt 4553  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    ||||||||| ||||||||||||  ||||||||||||    
T  4554 aaaattttg-aaaaacccctctcaaaatcccttcag 4588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 26427 - 26557
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26427 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 26526  T
Q  118 aaaattttgaaaaaacccctcttcaaatccct 149  Q
    ||||||||| ||||||||||||| ||| ||||    
T  26527 aaaattttg-aaaaacccctcttaaaacccct 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18565450 - 18565335
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||     
T  18565450 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttattccgctaagaggatt 18565351  T
Q  117 -taaaattttgaaaaa 131  Q
     |||||||||||||||    
T  18565350 ataaaattttgaaaaa 18565335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 24694453 - 24694319
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  24694453 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 24694354  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||  || |||||| |||||| ||||| ||||||    
T  24694353 aaaatcatg-aaaaacacctctttaaatctcttcag 24694319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 24701222 - 24701088
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  24701222 gtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggatt 24701123  T
Q  118 aaaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    |||||  || |||||| |||||| ||||| ||||||    
T  24701122 aaaatcatg-aaaaacacctctttaaatctcttcag 24701088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 19713500 - 19713396
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||    
T  19713500 gtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaataatttaatcaagatccgtttcaatgagatttcttccgcaaagaggat 19713401  T
Q  117 taaaa 121  Q
    |||||    
T  19713400 taaaa 19713396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 28718951 - 28718819
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||| | |||||| ||||||||||   ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| || ||||| ||    
T  28718951 gtaaacacatgaacccttaaagcgtttaagtttggttttgatttgtgattaatgatttaatcaagattcgtttcaacgggatttgttctgccaagagtat 28718852  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    | |||||||||||||  ||||||| |||||||||||    
T  28718851 t-aaattttgaaaaa--ccctctttaaatcccttca 28718819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 39539758 - 39539882
Alignment:
Q  32 cttaaagtgtttaagtttctgttt--gatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaa 129  Q
    |||||||||||||||| | || ||  |||||||||||||| |||||||||||||||||||| ||| ||||| ||||   ||| |||||||||||||  |     
T  39539758 cttaaagtgtttaagtatgtgcttatgatttgtgattaattatttaatcaagatccgtttc-atgagatttgttccattaagcggattaaaattttcgat 39539856  T
Q  130 aaacccctcttcaaatcccttcagaa 155  Q
    ||||||||||| ||||||||||||||    
T  39539857 aaacccctcttgaaatcccttcagaa 39539882  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 22546323 - 22546232
Alignment:
Q  51 tgtttgatttgtgattaatgatttaatcaagatccgtt-tcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctcttcaaat 145  Q
    ||||||||||||||||||| |||||||||||||| ||| ||   ||||||| ||| || |||||||||||||||||| ||||||||||||| ||||    
T  22546323 tgtttgatttgtgattaataatttaatcaagatctgttctc---gggatttattctgctaagaggattaaaattttg-aaaaacccctcttaaaat 22546232  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 17297953 - 17297875
Alignment:
Q  51 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaa 131  Q
    |||||||||||||||||||||||||||||| ||||| |||| | | |||| |||||| |||||| ||||||||||||||||    
T  17297953 tgtttgatttgtgattaatgatttaatcaatatccg-ttcatttgaatttattccgccaagagg-ttaaaattttgaaaaa 17297875  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 938477 - 938396
Alignment:
Q  53 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccc 136  Q
    ||||||||||||||||||||||| |||| || |||||||||| ||||| |||||| ||||  ||||||||||||||||| ||||    
T  938477 tttgatttgtgattaatgattta-tcaa-attcgtttcaatgagatttcttccgctaagaaaattaaaattttgaaaaaccccc 938396  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 17314029 - 17313949
Alignment:
Q  51 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaa 132  Q
    |||||||||||||||||||||||||||||| ||  | ||||   | |||| | |||| ||||||||||||||||||||||||    
T  17314029 tgtttgatttgtgattaatgatttaatcaatatatg-ttcatctgaatttatcccgccaagaggattaaaattttgaaaaaa 17313949  T

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Target: scaffold0705 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 7632 - 7496
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||    
T  7632 gtaaacacatgaatcttaaagtgtttaagtttctttttgatttgtgattaatgatttaatcaagatccgtttcaatgtgatttgttccgcttagaggatt 7533  T
Q  118 a-aaattttgaaaaaacccctcttcaaatcccttcag 153  Q
    | ||| |||| ||||||| ||||| ||||||||||||    
T  7532 ataaaatttggaaaaacctctcttaaaatcccttcag 7496  T

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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 22790826 - 22790711
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat- 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||     
T  22790826 gtaaacacatgaatcttaaagtgtttaagtttttgtttgatttgtgattaatgatttaatcaagatcaatttcaatgggatttcttccgcaaagaggatt 22790727  T
Q  117 -taaaattttgaaaaa 131  Q
     |||||||||||||||    
T  22790726 ataaaattttgaaaaa 22790711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 18621050 - 18621184
Alignment:
Q  18 gtaaacacatgaat-cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    |||||||||||||| |||||| ||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||    
T  18621050 gtaaacacatgaattcttaaattgtttaactatgtgtttgatttgtgattaatcatttaatcaagatccgtttcaatgagatttattccgcaaagaggat 18621149  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||||||||| |||||||| |||| |||||||||||    
T  18621150 taaaattttg-aaaaacccttcttaaaatcccttca 18621184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 41664996 - 41665115
Alignment:
Q  32 cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaa 131  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||  |||| || ||| ||||||||||||||||| |||||    
T  41664996 cttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccattttaatgatatttgttacgctaagaggattaaaatttt-aaaaa 41665094  T
Q  132 acccctcttcaaatcccttca 152  Q
    | ||||||| |||||||||||    
T  41665095 agccctctttaaatcccttca 41665115  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 27353600 - 27353686
Alignment:
Q  58 tttgtgattaatgatttaatcaagatc-----cgtttcaatgggattttttccgcaaagaggattaaaattttgaaaaaacccctctt 140  Q
    |||||||||||||||||||||||||||     ||||||||||| |||| |||||| ||||| |||||||||||| |||||||||||||    
T  27353600 tttgtgattaatgatttaatcaagatctgtttcgtttcaatggaatttgttccgctaagagaattaaaattttg-aaaaacccctctt 27353686  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 44856211 - 44856103
Alignment:
Q  21 aacacatgaatcttaaa--gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatta 118  Q
    |||||||||||||| ||  ||||||| |||||  ||||| |||||||||||| ||||||||| || ||||  | ||||||| ||| ||| || |||||||    
T  44856211 aacacatgaatctttaactgtgtttaggtttccatttgaattgtgattaatggtttaatcaatattcgtt--attgggattgttt-cgctaaaaggatta 44856115  T
Q  119 aaattttgaaaa 130  Q
    || |||||||||    
T  44856114 aatttttgaaaa 44856103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 6742 - 6877
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||||| || || ||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  6742 gtaaacacatgaatcctttaattgtttaagtatgtgtttgattggtgattaatgatttaatcaagatccatttcaatgggatttcttccgcaaagaggat 6841  T
Q  117 taaaattttgaaaaaacccctct-tcaaatcccttca 152  Q
    |||||||||| |||||||||||| | |||||||||||    
T  6842 taaaattttg-aaaaacccctctattaaatcccttca 6877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 107240 - 107107
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||| |||    
T  107240 gtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgttttaatgggatttgtttcgctaaga-gat 107142  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    |||| ||||| ||||||| ||||| |||||||||||    
T  107141 taaatttttg-aaaaacctctctttaaatcccttca 107107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 974 - 892
Alignment:
Q  18 gtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattt 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  974 gtaaacacatgaatcttgaagtgtttaagtttttgtttgatttgtgattaatgatttaagcaagatccatttcaatgggattt 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 261 - 394
Alignment:
Q  19 taaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggatta 118  Q
    ||||||||||||| ||||||||||||||    | |||||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||  |||||||||    
T  261 taaacacatgaattttaaagtgtttaagaacatttttgatttttgattaatgatttaatcaagatccgattcaatgggatttattctgctgagaggatta 360  T
Q  119 aaattttgaaaaaacccctcttcaaatcccttca 152  Q
    ||||||||||||||  ||||   |||||||||||    
T  361 aaattttgaaaaaaaacctcaataaatcccttca 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 229380 - 229259
Alignment:
Q  18 gtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgat---ttaatcaagatccgtttcaatgggattttttccgcaaagag 113  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| ||   ||||||||||| ||||||||||  |||| ||||||||||||    
T  229380 gtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaataataatttaatcaagattcgtttcaatgaaatttcttccgcaaagag 229281  T
Q  114 gattaaaattttgaaaaaaccc 135  Q
    ||||||||||| ||||||||||    
T  229280 gattaaaatttggaaaaaaccc 229259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 59375 - 59442
Alignment:
Q  152 agaaacggctctacaccnnnnnnngcattgtgatgtggcgagtttggtgtggttaaaattgatgatgt 219  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  59375 agaaacggctctacacctttttttgcattgtgatgtggcgagtttggtgtggttaaaattgatgatgt 59442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 87925 - 88059
Alignment:
Q  18 gtaaacacatgaatctt-aaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggattttttccgcaaagaggat 116  Q
    |||||| |||||||||| ||| |||||| || | ||||||||| ||||| ||| ||||||||||||||||||||||||  |||| ||||||| |||||||    
T  87925 gtaaactcatgaatctttaaattgtttatgtatgtgtttgattagtgataaataatttaatcaagatccgtttcaatgaaatttcttccgcatagaggat 88024  T
Q  117 taaaattttgaaaaaacccctcttcaaatcccttca 152  Q
    | |||  ||| ||||||||||||| |||||||||||    
T  88025 t-aaagattggaaaaacccctcttaaaatcccttca 88059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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