View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_6 (Length: 385)
Name: NF5992_low_6
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 162 - 369
Target Start/End: Original strand, 13491144 - 13491351
Alignment:
| Q |
162 |
ttaactttttgactattttttatgtgaaccaactattctcaacacgcaatcatagatttaatccggttgtattcctgcaaggaaattttgataatttcac |
261 |
Q |
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| T |
13491144 |
ttaactttttgactattttttatgtgaaccaactattctcaacacgcaatcatagatttaatccggttgtattcctgcaaggaaattttgataatttcac |
13491243 |
T |
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| Q |
262 |
agttttaatttcaattattcaattagctattcaaccataaatagtttaggtattttacaatttgcctaatatttgcagagtatcagttattaatgttggt |
361 |
Q |
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| T |
13491244 |
agttttaatttcaattattcaattagctattcaaccataaatagtttaggtattttacaatttgcctaatatttgtagagtatcagttattaatgttggt |
13491343 |
T |
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| Q |
362 |
caatatgt |
369 |
Q |
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|||||||| |
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| T |
13491344 |
caatatgt |
13491351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 13490994 - 13491091
Alignment:
| Q |
15 |
tataatgttgtacgaaaatccatattttatggtcataaacatgtatgtaagaaaatcattaaaaaattcaacatctagatcactttatgcataaatgg |
112 |
Q |
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| T |
13490994 |
tataatgttgtatgaaaatccatattttatggtcataaacatgtatgtaagaaaatcattaaaaaattcaacatctagatcactttatgcataaatgg |
13491091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 25708968 - 25708899
Alignment:
| Q |
30 |
aaatccatattttatggtcataaacatgtatgtaagaaaatcattaaaaaattcaacatctagatcacttt |
100 |
Q |
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| T |
25708968 |
aaatacatattttatcgtcataaacatgattgcaa-aaaatcataaaaagattcaacatctagattacttt |
25708899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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