View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_8 (Length: 350)
Name: NF5992_low_8
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 1094801 - 1095119
Alignment:
| Q |
9 |
attatactcacaaccattgctcattggatcagtagtatcatgattcatgagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgctta |
108 |
Q |
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| T |
1094801 |
attatactcacaaccattgctcattggatcagtagtatcat-------gagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgctta |
1094893 |
T |
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| Q |
109 |
attaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttatcaagtaaata |
208 |
Q |
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| T |
1094894 |
attaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttaacaagtaaata |
1094993 |
T |
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| Q |
209 |
tggggtggatggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttgattt |
308 |
Q |
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| T |
1094994 |
tggggtggatggggttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttggttt |
1095093 |
T |
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| Q |
309 |
tctaaccgcatgccaaaagtagttgg |
334 |
Q |
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| T |
1095094 |
tctaaccgcatgccaaaagtagttgg |
1095119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 334
Target Start/End: Original strand, 1116295 - 1116556
Alignment:
| Q |
77 |
aatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatgg |
176 |
Q |
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| T |
1116295 |
aattttggttttagttgatgcttgccttcttaattgggtcccaaaggtgaatattgattttgttggagaagtggtgttggtgaatgagcgatgtgaatag |
1116394 |
T |
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| Q |
177 |
agtttatggtttaaatttttatcaagtaaatatggggtg-gatggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagt |
275 |
Q |
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| T |
1116395 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
1116494 |
T |
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| Q |
276 |
acagatagtggtgg---tgttcctggtagttgattttctaaccgcatgccaaaagtagttgg |
334 |
Q |
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| T |
1116495 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttgg |
1116556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 290
Target Start/End: Original strand, 1097869 - 1098087
Alignment:
| Q |
70 |
agtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtg |
169 |
Q |
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| T |
1097869 |
agtagacaattttggcttaaatttatacttgcttgcttaattgggttccaaaggtaaatattgctttt-ttggagaagtggtgttggaggata-----ta |
1097962 |
T |
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| Q |
170 |
tgaatggagtttatggtttaaatttttatcaagtaaatatggggtgg---atggggttttttatagggtgtaatctagattcatctt-gttggaaaaact |
265 |
Q |
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| T |
1097963 |
tgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggtgtaatctagatttatcttggtgggaaaaact |
1098062 |
T |
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| Q |
266 |
aatgttgagtacagatagtggtggt |
290 |
Q |
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| T |
1098063 |
aatgttgagtaaagatggtggtggt |
1098087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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